Stem-loop sequence hsa-mir-548ap

Accession

MI0017875 (change log)

Symbol

HGNC:MIR548AP

Description

Homo sapiens miR-548ap stem-loop

Gene family

MIPF0000317; mir-548

Literature search

57 open access papers mention hsa-mir-548ap
(171 sentences)

Stem-loop

   -acc    cc     ug   c           c   c     c   aa 
5'     aauu  uaggu  gug aaaaguaauug ggu uuugu auu  a
       ||||  |||||  ||| ||||||||||| ||| ||||| |||   
3'     uuag  aucca  cau uuuucauuaac cca aaaca uaa  a
   uuaa    aa     gu   -           a   a     a   cc 

Deep sequencing

7773 reads, 2.63 reads per million, 152 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr15: 85825635-85825730 [+]
• Overlapping transcripts:

  antisense

  OTTHUMT00000417109 ; RP11-561C5.5-002; intron 1

  ENST00000559518 ; ADAMTS7P4-002; intron 1

Database links

• HGNC:MIR548AP
• miRBase Tracker:MI0017875

Mature sequence hsa-miR-548ap-5p

• Accession: MIMAT0021037
• Sequence: 21 - aaaaguaauugcggucuuu - 39
• Deep sequencing: 4706 reads, 147 experiments
• Evidence: not experimental
• Predicted targets:
  • TargetMiner:hsa-miR-548ap-5p
  • TargetScanVert:hsa-miR-548ap-5p
  • miRDB:hsa-miR-548ap-5p

Mature sequence hsa-miR-548ap-3p

• Accession: MIMAT0021038
• Sequence: 58 - aaaaaccacaauuacuuuu - 76
• Deep sequencing: 2631 reads, 85 experiments
• Evidence: not experimental
• Predicted targets:
  • TargetMiner:hsa-miR-548ap-3p
  • TargetScanVert:hsa-miR-548ap-3p
  • miRDB:hsa-miR-548ap-3p

References

1. PMID:21558790 "Enhancing miRNA annotation confidence in miRBase by continuous cross dataset analysis" Hansen TB, Kjems J, Bramsen JB RNA Biol. 8:378-383(2011).