Stem-loop sequence ath-MIR5020a

Accession

MI0017888 (change log)

Description

Arabidopsis thaliana miR5020a stem-loop

Gene family

MIPF0001226; MIR5020

Stem-loop

        aa    -       ugaga    auua g      ggc      au           a        -   --      aauca 
5' aaaua  gcaa aucuaag     gaua    u agugau   cauggc  ggaagaaggug gacuugca uga  aucgug     a
   |||||  |||| |||||||     ||||    | ||||||   ||||||  ||||||||||| |||||||| |||  ||||||      
3' uuuau  uguu uagauuc     uuau    a ucacua   guaccg  ccuuuuuccau cugaacgu acu  uaguac     a
        ca    c       -uaaa    ---g g      aua      au           g        c   au      cucca 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (TAIR10; GCA_000001735.1): chr4: 6791301-6791470 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from ath-MIR5020a

• ath-MIR5020a: chr4: 6791301-6791470 [-]
• ath-MIR5020b: chr4: 6787003-6787153 [-]

Database links

• miRBase Tracker:MI0017888

Mature sequence ath-miR5020a

• Accession: MIMAT0020524
• Sequence: 50 - uggaagaaggugagacuugca - 70
• Evidence: experimental; Illumina [1-2]

References

1. PMID:21357774 "MicroRNA activity in the Arabidopsis male germline" Borges F, Pereira PA, Slotkin RK, Martienssen RA, Becker JD J Exp Bot. 62:1611-1620(2011).
2. PMID:21940835 "High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis" Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN Genome Res. 22:163-176(2012).