miRBase entry: ath-MIR5021

Stem-loop ath-MIR5021


Accession
MI0017889
Description
Arabidopsis thaliana ath-MIR5021 precursor miRNA

Literature search
7 open access papers mention ath-MIR5021
(16 sentences)

Sequence

guagugaugaugaauuugagauuugggagagggagaggauUGAGAAGAAGAAGAAGAAAAgagugauuugagaguucaugggucuugaaagauuuuagugacuuucguuaucuuccuuguuguuguucuucuucucuaauaaguucuucaauggaguuuugucgucucuau
((((.((((((......(((((((.(..((((((....((((((((((((((.((.(((((...(((.(((((((.(((((((((....))))))..))))))))))..)))...))).)).)).))))))))))).)))...))))))..).))))))))))))).))))

Structure
    u      gaauuu       g ga      gagg   -           G  G  -   agu   -u       u   --      u 
guag gaugau      gagauuu g  gaggga    auU GAGAAGAAGAA AA AA AAg   gau  ugagagu cau  gggucu g
|||| ||||||      ||||||| |  ||||||    ||| ||||||||||| || || |||   |||  ||||||| |||  ||||||  
uauc cugcug      uuuugag u  cuucuu    uaa cucuucuucuu uu uu uuc   cua  gcuuuca gug  uuuaga a
    u      ------       g aa      -gaa   u           g  g  g   cuu   uu       -   au      a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr2: 11974711-11974881 [-]

Database links

Mature ath-miR5021

Accession MIMAT0020525
Description Arabidopsis thaliana ath-miR5021 mature miRNA
Sequence 41 - UGAGAAGAAGAAGAAGAAAA - 60
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21357774
    MicroRNA activity in the Arabidopsis male germline
    "Borges F, Pereira PA, Slotkin RK, Martienssen RA, Becker JD"
    "J Exp Bot (2011) 62:1611-1620