Stem-loop ath-MIR5022

Accession

MI0017891

Description

Arabidopsis thaliana ath-MIR5022 precursor miRNA

Sequence

guauaaacuagaaaacuGUCAUGGGGUAUGAUCGAAUGuuuguguacucauuuuucguggauaugaagauaugcaacauuugaucauucuccaugauaguauucuaguucgauauau
((((.((((((((.((((((((((((.(((((((((((((.(((((.....(((((((....))))))))))))))))))))))))).)))))))))))).))))))))..))))..

Structure

--    -a        a            U             u     cucau       g 
  guau  aacuagaa acuGUCAUGGGG AUGAUCGAAUGuu gugua     uuuucgu g
  ||||  |||||||| |||||||||||| ||||||||||||| |||||     |||||||  
  uaua  uugaucuu ugauaguaccuc uacuaguuuacaa cguau     agaagua a
ua    gc        a            u             -     -----       u 

Annotation confidence Not enough data

Genome context

chr1: 22372462-22372578 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ath-MIR5022

Mature ath-miR5022

• Accession: MIMAT0020527
• Description: Arabidopsis thaliana ath-miR5022 mature miRNA
• Sequence: 18 - GUCAUGGGGUAUGAUCGAAUG - 38
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21357774
   MicroRNA activity in the Arabidopsis male germline
   "Borges F, Pereira PA, Slotkin RK, Martienssen RA, Becker JD"
   "J Exp Bot (2011) 62:1611-1620