Stem-loop ath-MIR5023

Accession

MI0017892

Description

Arabidopsis thaliana ath-MIR5023 precursor miRNA

Sequence

auguugcauauccuuugccaauuuuguaaAUUGGUAGUGGAUAAGGGGGCaaauuugauuuuucaaauuuguuagcagaauuugccuccuuaucuuuugccgauucacaaaguugccacuuaaaaauguaagcgu
(((((((((......((.(((((((((.(((((((((.((((((((((((((((((.......((....))......)))))))))))))))))).))))))))).))))))))).)).......)))).)))))

Structure

     -    -auccuu  c         a         U                  gauuuuu  a 
auguu gcau       ug caauuuugu aAUUGGUAG GGAUAAGGGGGCaaauuu       ca a
||||| ||||       || ||||||||| ||||||||| ||||||||||||||||||       ||  
ugcga ugua       ac guugaaaca uuagccguu ucuauuccuccguuuaag       gu u
     a    aaaauuc  c         c         u                  -acgauu  u 

Annotation confidence Not enough data

Genome context

chr3: 5496985-5497119 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from ath-MIR5023

Mature ath-miR5023

• Accession: MIMAT0020528
• Description: Arabidopsis thaliana ath-miR5023 mature miRNA
• Sequence: 30 - AUUGGUAGUGGAUAAGGGGGC - 50
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 21357774
   MicroRNA activity in the Arabidopsis male germline
   "Borges F, Pereira PA, Slotkin RK, Martienssen RA, Becker JD"
   "J Exp Bot (2011) 62:1611-1620


2. PubMed ID: 21940835
   High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis
   "Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN"
   "Genome Res (2012) 22:163-176