miRBase entry: ath-MIR5020b

Stem-loop ath-MIR5020b


Accession
MI0017893
Description
Arabidopsis thaliana ath-MIR5020b precursor miRNA
Gene family
MIPF0001226; MIR5020


Sequence

ugagagauaauuaugagugauggucAUGGCAUGAAAGAAGGUGAGAauugcaucgugaaucaaaaccuccacaaguuggauaucuugauuuucugaucaacgcaauucuuacuuucuuucuugcuccuaucaucacugaguauuuuaauca
...((...(((..(.(((((((((...((((.(((((((((((((((((((((((.(((((((....((((.....))))....)))))))..))))....))))))))))))))))))).))))...))))))))).)..)))....)).

Structure
uga  -gau   ua g         cAU    U                   ----    -u       aacc    c 
   ga    aau  u agugauggu   GGCA GAAAGAAGGUGAGAauugc    aucg  gaaucaa    ucca a
   ||    |||  | |||||||||   |||| |||||||||||||||||||    ||||  |||||||    |||| a
   cu    uua  a ucacuacua   ucgu cuuucuuucauucuuaacg    uagu  uuuaguu    aggu g
--a  aauu   ug g         ucc    u                   caac    cu       cuau    u 


Annotation confidence Not enough data
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Genome context
chr4: 6787003-6787153 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ath-MIR5020b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ath-miR5020b

Accession MIMAT0020529
Description Arabidopsis thaliana ath-miR5020b mature miRNA
Sequence 26 - AUGGCAUGAAAGAAGGUGAGA - 46
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21357774
    MicroRNA activity in the Arabidopsis male germline
    "Borges F, Pereira PA, Slotkin RK, Martienssen RA, Becker JD"
    "J Exp Bot (2011) 62:1611-1620