miRBase entry: ath-MIR5026

Stem-loop ath-MIR5026


Accession
MI0017896
Description
Arabidopsis thaliana ath-MIR5026 precursor miRNA


Sequence

auaaaaagaaaauuauauuuacacgugucaaaaucugagaucgauaaauuuaacucguggcacgacccugugaguuacuaacuuugaaaaccauagcauaguuuucaaaguuaguaACUCAUAAGAUCGUGACACGUgguaaaucuauugauuuuagauuuugauauguguaaaacaaaauuuucauuuuuau
((((((((((((((...(((((((((((((((((((((((((((((.(((((.(.((((.(((((.(.(((((((((((((((((((((((.........))))))))))))))))))))))).).))))).)))).).))))).)))))))))))))))))))))))))))))....))))))).)))))))

Structure
       -       -aua                             a     a u    g     c c                       cau 
auaaaaa gaaaauu    uuuacacgugucaaaaucugagaucgaua auuua c cgug cacga c ugugaguuacuaacuuugaaaac   a
||||||| |||||||    ||||||||||||||||||||||||||||| ||||| | |||| ||||| | |||||||||||||||||||||||   g
uauuuuu cuuuuaa    aaauguguauaguuuuagauuuuaguuau uaaau g GCAC GUGCU G AUACUCAaugauugaaacuuuug   c
       a       aaca                             c     g U    A     A A                       aua 


Annotation confidence Not enough data
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Genome context
chr4: 7844496-7844688 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from ath-MIR5026
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ath-miR5026

Accession MIMAT0020532
Description Arabidopsis thaliana ath-miR5026 mature miRNA
Sequence 117 - ACUCAUAAGAUCGUGACACGU - 137
Evidence experimental
Illumina [1-2]

References

  1. PubMed ID: 21357774
    MicroRNA activity in the Arabidopsis male germline
    "Borges F, Pereira PA, Slotkin RK, Martienssen RA, Becker JD"
    "J Exp Bot (2011) 62:1611-1620

  2. PubMed ID: 21940835
    High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis
    "Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN"
    "Genome Res (2012) 22:163-176