Stem-loop sequence gma-MIR171h

Accession

MI0017905 (change log)

Description

Glycine max miR171h stem-loop

Gene family

MIPF0000104; MIR171_2

Literature search

16 open access papers mention gma-MIR171h
(43 sentences)

Stem-loop

   ----------------------------------------------    --         c  c           a      a        caaccac 
5'                                               gcaa  aaguagaca gg gugauauuggu cggcuc ucuuaauu       u
                                                 ||||  ||||||||| || ||||||||||| |||||| ||||||||        
3'                                               cguu  uucguuugu uc cacuauaacua gccgag agaguuag       a
   cguaucaaaccaaagauuucuuuuucgacgaucauauauauauaua    ac         -  u           a      c        caacuau 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Glycine_max_v2.0; GCA_000004515.3): chr6: 10887944-10888094 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from gma-MIR171h

• gma-MIR171h: chr6: 10887944-10888094 [-]
• gma-MIR171s: chr6: 10887673-10887774 [-]

Database links

• miRBase Tracker:MI0017905

Mature sequence gma-miR171h

• Accession: MIMAT0021054
• Sequence: 62 - auugagacgagccgaaucaau - 82
• Evidence: experimental; SOLiD [1]

References

1. PMID:21751852 "Transcriptional analysis of soybean root response to Fusarium virguliforme, the causal agent of sudden death syndrome" Radwan O, Liu Y, Clough SJ Mol Plant Microbe Interact. 24:958-972(2011).