miRBase entry: gma-MIR5036

Stem-loop gma-MIR5036


Accession
MI0017909
Description
Glycine max gma-MIR5036 precursor miRNA
Gene family
MIPF0000216; MIR477


Sequence

agggguugauuguucacucucccucaagggcuucucgcuuuaacauccaagaacaagacuAGAGGCCCUUGGGGAGGAGUAAauaagcuguuccuuauauauauauauauauauaacacaaagaaguucaucuuguuucucaccuucauaa
(((((.(((....)))...)))))..(((((.....))))).........((((((((...(((...(((.(((((.(((......))).)))))((((((((....)))))))).....)))...))).)))))))).............

Structure
agggguugauuguucacucucccucaagggcuucucgcuuuaacauccaa        cuA   GCC   ------------------------G     G   AA 
                                                  gaacaaga   GAG   CUU                         GGGAG AGU  a
                                                  ||||||||   |||   |||                         ||||| |||   
                                                  uuuguucu   cuu   gaa                         uccuu ucg  u
-------------------------------------aauacuuccacuc        --a   gaa   acacaauauauauauauauauauau     g   aa 


Annotation confidence Not enough data
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Genome context
chr8: 1774168-1774318 [+]

Database links

Mature gma-miR5036

Accession MIMAT0021059
Description Glycine max gma-miR5036 mature miRNA
Sequence 61 - AGAGGCCCUUGGGGAGGAGUAA - 82
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 21751852
    Transcriptional analysis of soybean root response to Fusarium virguliforme, the causal agent of sudden death syndrome
    "Radwan O, Liu Y, Clough SJ"
    "Mol Plant Microbe Interact (2011) 24:958-972