Stem-loop gma-MIR5037a

Accession

MI0017910

Description

Glycine max gma-MIR5037a precursor miRNA

Gene family

MIPF0001288; MIR5037

Sequence

aauaaacaaguuucuuauaggucuaugcaugaaguuguacauagagcaugcuuuuuagugGCCUCAAAGGCUUCCACUACUGcauguuucugucgguuuaauauauccugaaacaaguaguaguggaugccuggagguccauuaaaggcaa
...................(.((((((((......))..)))))).).(((((((.(((((((((..((((.(((((((((((.((((((....(((.......)))..)))))).))))))))))).)))).)))).)))))))))))).

Structure

aauaaacaaguuucuuauaggucuaugcaugaaguuguacauagagca       u     -    AA    U           a      uguc   uu 
                                                ugcuuuu agugG CCUC  AGGC UCCACUACUGc uguuuc    ggu  a
                                                ||||||| ||||| ||||  |||| ||||||||||| ||||||    |||  a
                                                acggaaa uuacc ggag  uccg aggugaugaug acaaag    cua  u
-----------------------------------------------a       -     u    -g    u           a      --uc   ua 

Annotation confidence Not enough data

Genome context

chr8: 47688219-47688369 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from gma-MIR5037a

Mature gma-miR5037a

• Accession: MIMAT0021060
• Description: Glycine max gma-miR5037a mature miRNA
• Sequence: 61 - GCCUCAAAGGCUUCCACUACUG - 82
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21751852
   Transcriptional analysis of soybean root response to Fusarium virguliforme, the causal agent of sudden death syndrome
   "Radwan O, Liu Y, Clough SJ"
   "Mol Plant Microbe Interact (2011) 24:958-972