Stem-loop gma-MIR1521b

Accession

MI0017915

Description

Glycine max gma-MIR1521b precursor miRNA

Literature search

1 open access papers mention gma-MIR1521b
(2 sentences)

Sequence

10699 reads, 44.0 reads per million, 178 experiments

ccaauaggauuaugacauuuggcagucaacauuuuccauuaacagucaAUGAGUAAUGAUGACUGUCACGUGucauaaucauauuggacauuaauuuucguacaccauuuuaacauccaauaAGAUUAUGAUACAUGGCUGUUAACguuuu
......(((..(((((........))))...)..))).................((((.((((.((((.(((((((((((.(((((((..((((...............))))..))))))).))))))))))).)))).)))).))))..

Structure

ccaauaggauuaugacauuuggcagucaacauuuuccauuaacagucaAUGAGU    A    U    C           a       ca    uuuucg 
                                                      AAUG UGAC GUCA GUGucauaauc uauugga  uuaa      u
                                                      |||| |||| |||| ||||||||||| |||||||  ||||      a
                                                      uugC AUUG CGGU CAUAGUAUUAG auaaccu  aauu      c
----------------------------------------------------uu    A    U    A           A       ac    uuacca 

Annotation confidence Low

Genome context

chr11: 12131454-12131604 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from gma-MIR1521b

Mature gma-miR1521b-5p

• Accession: MIMAT0021065
• Description: Glycine max gma-miR1521b-5p mature miRNA
• Sequence: 49 - AUGAGUAAUGAUGACUGUCACGUG - 72
• Evidence: experimental ; SOLiD [1]

Mature gma-miR1521b-3p

• Accession: MIMAT0054212
• Description: Glycine max gma-miR1521b-3p mature miRNA
• Sequence: 123 - AGAUUAUGAUACAUGGCUGUUAAC - 146
• Evidence: experimental ; unknown

References

1. PubMed ID: 21751852
   Transcriptional analysis of soybean root response to Fusarium virguliforme, the causal agent of sudden death syndrome
   "Radwan O, Liu Y, Clough SJ"
   "Mol Plant Microbe Interact (2011) 24:958-972