miRBase entry: osa-MIR5072

Stem-loop osa-MIR5072


Accession
MI0017943
Description
Oryza sativa osa-MIR5072 precursor miRNA

Literature search
7 open access papers mention osa-MIR5072
(14 sentences)

Sequence

69 reads, 52 reads per million, 2 experiments
gcugaauagauCGAUUCCCCAGCGGAGUCGCCAaaaaucguguuggcaacuuuuuugacaagucgacaagcacgau
(((.......((((((...(((.(((((.(((((........))))).))))).)))...))))))..))).....

Structure
-----   gaauaga      CCC   C     C     aaa 
     gcu       uCGAUU   CAG GGAGU GCCAa   u
     |||       ||||||   ||| ||||| |||||    
     cga       agcuga   guu uuuca cgguu   c
uagca   -----ac      aca   u     a     gug 


Annotation confidence Not enough data
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Comments
This is a predicted homolog of a miRNA identified by Illumina deep sequencing in barley (Hordeum vulgare) [1].

Genome context
Chr6: 17458695-17458770 [-]

Database links

Mature osa-miR5072

Accession MIMAT0020552
Description Oryza sativa osa-miR5072 mature miRNA
Sequence 12 - CGAUUCCCCAGCGGAGUCGCCA - 33
Evidence not_experimental
Database links

References

  1. PubMed ID: 21352554
    Discovery of barley miRNAs through deep sequencing of short reads
    Schreiber AW, Shi BJ, Huang CY, Langridge P, Baumann U
    BMC Genomics (2011) 12:129