miRBase entry: bdi-MIR5056

Stem-loop bdi-MIR5056


Accession
MI0017945
Description
Brachypodium distachyon bdi-MIR5056 precursor miRNA


Sequence

cucaauuugggAGGAAGAACCGGUAAUAAGCAaaaaaccauccauucagguucuacauuuguuugaauaaaauguuucgccaauugcaugcgucuaaucaaaaaaacuuuucuuauucaucuuuuucuaucuucccauucaucu
.......((((((((((((..(((((((((.((((.(((((.((....(((...((((((.........))))))...)))...)).))).))..............)))))))))).)))...)))).)))))))).......

Structure
cucaauu        -    -CC   -      C    -------------a  -   c  uuca   ucu      guu 
       ugggAGGA AGAA   GGU AAUAAG Aaaa              ac cau ca    ggu   acauuu   u
       |||||||| ||||   ||| |||||| ||||              || ||| ||    |||   ||||||   g
       acccuucu ucuu   cua uuauuc uuuu              ug gua gu    ccg   uguaaa   a
ucuacuu        a    uuu   c      -    caaaaaaacuaauc  c   c  -uaa   cuu      aua 


Annotation confidence Not enough data
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Comments
This is a predicted homolog of a miRNA identified by Illumina deep sequencing in barley (Hordeum vulgare) [1].

Genome context
2: 20794717-20794860 [+]

Database links

Mature bdi-miR5056

Accession MIMAT0020554
Description Brachypodium distachyon bdi-miR5056 mature miRNA
Sequence 12 - AGGAAGAACCGGUAAUAAGCA - 32
Evidence not_experimental

References

  1. PubMed ID: 21352554
    Discovery of barley miRNAs through deep sequencing of short reads
    Schreiber AW, Shi BJ, Huang CY, Langridge P, Baumann U
    BMC Genomics (2011) 12:129