Stem-loop bdi-MIR5060

Accession

MI0017953

Description

Brachypodium distachyon bdi-MIR5060 precursor miRNA

Sequence

ggugggcaccgaggcggugcuggaacuggccggcgguggacggcggaacuggaacugcggcggcaagguaagaucuaugcggcagcagguuuggggguggaagucgccggugagaggagugguuccggcggcggugagagcucccaagugcacaaaucuauaugaguugaguuguguuucgggacggaugaaaaaccugccaaguauuuucgaucuucuuguucugcaucucuccuuauuauucuccacgaaaaccugccaaguaugucaaccgccCGGCUAGCUAGAGACCGCCAAugucgcuuc
...((((((...((((((.((((..((((((((((((.((((((((........)))).((.(((.((......)).))).)).((((((((....(((((.((((((((..............))))))))((.((((((((((....((((((.((..........)).))))))...)))).(((((((((..((....))..))))).)))).........)).)))).)).........)))))..))))))))......)))).)))).))))))))))))..))))))...)).)))).

Structure

ggu    -  cga      -g    aa        -    g    gcggaacuggaacugcggcggcaagguaagaucuaugcggca        gggg     agucgccggugagaggagugguuccggcggc  u    -  -----------------------------------------    aagu      a  uaua 
   gggc ac   ggcggu  cugg  cuggccgg cggu gacg                                          gcagguuu    gugga                               gg gaga gc                                         uccc    gcacaa uc    u
   |||| ||   ||||||  ||||  |||||||| |||| ||||                                          ||||||||    |||||                               || |||| ||                                         ||||    |||||| ||     
   uucg ug   CCGCCA  GAUC  GAUCGGCc gcca cugu                                          cguccaaa    caccu                               cc cucu cg                                         aggg    uguguu ag    g
--c    c  uAA      GA    --        c    a    ------------------------------------augaac        --ag     ----------------------cuuauuauu  u    a  ucuuguucuucuagcuuuuaugaaccguccaaaaaguaggc    -cuu      g  uuga 

Annotation confidence Not enough data

Comments

This is a predicted homolog of a miRNA identified by Illumina deep sequencing in barley (Hordeum vulgare) [1].

Genome context

5: 10072906-10073211 [-]

Mature bdi-miR5060

• Accession: MIMAT0020562
• Description: Brachypodium distachyon bdi-miR5060 mature miRNA
• Sequence: 277 - CGGCUAGCUAGAGACCGCCAA - 297
• Evidence: not_experimental

References

1. PubMed ID: 21352554
   Discovery of barley miRNAs through deep sequencing of short reads
   Schreiber AW, Shi BJ, Huang CY, Langridge P, Baumann U
   BMC Genomics (2011) 12:129