Stem-loop bdi-MIR1878

Accession

MI0017956

Description

Brachypodium distachyon bdi-MIR1878 precursor miRNA

Gene family

MIPF0001218; MIR1878

Sequence

ucacuauugcaaACUUAGUCUGAACACUAUAAAAAAugcucauguaaaaauaugcgcaucauagAUUUGUAGUGUUCAGAUUGAGUUUacaguaguug
..(((((((.(((((((((((((((((((((((..((((.(((((....))))).))))......))))))))))))))))))))))).)))))))..

Structure

uc       c                       ----AA    u     a 
  acuauug aaACUUAGUCUGAACACUAUAAA      Augc caugu a
  ||||||| |||||||||||||||||||||||      |||| |||||  
  ugaugac UUUGAGUUAGACUUGUGAUGUUU      uacg guaua a
gu       a                       Agauac    c     a 

Annotation confidence Not enough data

Genome context

4: 37301958-37302055 [+]

Mature bdi-miR1878-3p

• Accession: MIMAT0020565
• Description: Brachypodium distachyon bdi-miR1878-3p mature miRNA
• Sequence: 65 - AUUUGUAGUGUUCAGAUUGAGUUU - 88
• Evidence: experimental ; Illumina [3]

Mature bdi-miR1878-5p

• Accession: MIMAT0027040
• Description: Brachypodium distachyon bdi-miR1878-5p mature miRNA
• Sequence: 13 - ACUUAGUCUGAACACUAUAAAAAA - 36
• Evidence: experimental ; Illumina [3]

References

1. PubMed ID: 21371551
   Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
   "Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G"
   "Genomics (2011) 97:282-293


2. PubMed ID: 21352554
   Discovery of barley miRNAs through deep sequencing of short reads
   Schreiber AW, Shi BJ, Huang CY, Langridge P, Baumann U
   BMC Genomics (2011) 12:129


3. PubMed ID: 23264558
   Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
   "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
   "Mol Plant (2013) 6:423-443