miRBase entry: tae-MIR5085

Stem-loop tae-MIR5085


Accession
MI0017958
Description
Triticum aestivum tae-MIR5085 precursor miRNA

Literature search
2 open access papers mention tae-MIR5085
(19 sentences)

Sequence

272 reads, 5 reads per million, 105 experiments
uaaagugaaaAAGGACAUUUUUUGUGGCCUGuguaaaaaagacaauuuucgacgcuuaauuacaacuauucacgaggcauuuuuuuaucuuuuuauacaugccacaaacaaugucccuuuucaccgaa
....(((((((.(((((((.((((((((.((((((((((.((.((.....((.((((.................)))).))...)).)))))))))))).)))))))).))))))).)))))))....

Structure
uaaa       A       U        C          a  c  uuuuc  c    aauuaca 
    gugaaaA GGACAUU UUUGUGGC UGuguaaaaa ga aa     ga gcuu       a
    ||||||| ||||||| |||||||| |||||||||| || ||     || ||||       c
    cacuuuu ccuguaa aaacaccg acauauuuuu cu uu     uu cgga       u
aagc       c       c        u          -  a  --uuu  a    gcacuua 


Annotation confidence Not enough data
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Comments
This is a predicted homolog of a miRNA identified by Illumina deep sequencing in barley (Hordeum vulgare) [1].

Genome context
7B: 228951380-228951507 [+]

Database links

Mature tae-miR5085

Accession MIMAT0020567
Description Triticum aestivum tae-miR5085 mature miRNA
Sequence 11 - AAGGACAUUUUUUGUGGCCUG - 31
Evidence not_experimental

References

  1. PubMed ID: 21352554
    Discovery of barley miRNAs through deep sequencing of short reads
    Schreiber AW, Shi BJ, Huang CY, Langridge P, Baumann U
    BMC Genomics (2011) 12:129