Stem-loop bdi-MIR5062a

Accession

MI0017959

Description

Brachypodium distachyon bdi-MIR5062a precursor miRNA

Sequence

cguagcauggUGAACCUUGGGGAAAAGCCGCCUaacaugauuaaauuguauuuuguucuacuauuccaaaauuguugugguacaauauaaggugcagaguaaaguuuaacauguuaggcggauuuuucacuaagguucaugugguuauc
.(((((...(((((((((((.((((((((((((((((((.(((((((.((((((((.(((((((..((....))..))))).........)).)))))))).))))))))))))))))))).)))))).)))))))))))...))))).

Structure

c     aug           G      -            a       g        u  ---------     uc  a 
 guagc   gUGAACCUUGG GAAAAG CCGCCUaacaug uuaaauu uauuuugu cu         acuau  ca a
 |||||   ||||||||||| |||||| |||||||||||| ||||||| |||||||| ||         |||||  ||  
 uauug   uacuuggaauc cuuuuu ggcggauuguac aauuuga augagacg gg         uggug  gu a
c     gug           a      a            -       a        u  aauauaaca     uu  u 

Annotation confidence Not enough data

Comments

This is a predicted homolog of a miRNA identified by Illumina deep sequencing in barley (Hordeum vulgare) [1].

Genome context

1: 24013988-24014136 [-]

Mature bdi-miR5062a

• Accession: MIMAT0020568
• Description: Brachypodium distachyon bdi-miR5062a mature miRNA
• Sequence: 11 - UGAACCUUGGGGAAAAGCCGCCU - 33
• Evidence: not_experimental

References

1. PubMed ID: 21352554
   Discovery of barley miRNAs through deep sequencing of short reads
   Schreiber AW, Shi BJ, Huang CY, Langridge P, Baumann U
   BMC Genomics (2011) 12:129