miRBase entry: osa-MIR5078

Stem-loop osa-MIR5078


Accession
MI0017966
Description
Oryza sativa osa-MIR5078 precursor miRNA

Literature search
2 open access papers mention osa-MIR5078
(2 sentences)

Sequence

109 reads, 100 reads per million, 2 experiments
ggcuacaauaaaaugccacggcuaaauaggggguguucgcuagaaugucaucguggacgguauuucccuuggaucuucuucuuccuccaacaccugccaauucccuccaugucaugucgucgucccauggcagagcgcuccaaccuggcgcauccgaugaaguagccgucgcugcauaugcauugguuacagcagcaccagcacuacaggaugccaucgccgccgagcacgaaugugaagcagagcuccuugucuuggcagucaggcacugguggugggcaucaugagcugcugcuggagccaacgauggcaugacauggaggggaaugaccagcacccaacgucgagggaggaagagaagauccaagggcaauauuguccaugauggcauucuagcgaacaccCCUCGUUCGACCGUGGCAUUUuauagaagcc
((((.(.((((((((((((((...(((.((((((((((((((((((((((((((((((((((((.((((((((((((((.((((((((..((((((.((.(((((((((((((((((((((((....((((...(((((.......)))))..((((((..(((((....))))).....))))))...((((((((...((....((.((((((..((((((((.((..((.(((.((((((......))).))).))).))..))..)))))))))))))).)).))))))))))..))))))))))))))))))))))))))).))..)))........)).)..)))))))))))))))))))))).)))))))))))))))))))))))))))))))))))).)))...)))))))))))))).).))))

Structure
    a a              cua   a                                    u              u        aa -  --------   -c  a                       ccca    agagcgcuccaaccuggcgcauccgaugaaguagccgucgcugcauaugcauugguua        cca  acua  g      au        -a  ac  a   g   -   ag 
ggcu c auaaaaugccacgg   aau ggggguguucgcuagaaugucaucguggacgguauu cccuuggaucuucu cuuccucc  c ac        cug  ca uucccuccaugucaugucgucgu    uggc                                                          cagcagca   gc    ca gaugcc  cgccgccg  gc  ga ugu aag cag  c
|||| | ||||||||||||||   ||| |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||  | ||        |||  || |||||||||||||||||||||||    ||||                                                          ||||||||   ||    || ||||||  ||||||||  ||  || ||| ||| |||   
ccga g uauUUUACGGUGCC   UUG UCCccacaagcgaucuuacgguaguaccuguuauaa gggaaccuagaaga gaaggagg  g ug        gac  gu aggggagguacaguacgguagca    accg                                                          gucgucgu   cg    gu cuacgg  gugguggu  cg  cu acg uuc guu  u
    a a              AGC   C                                    c              -        ga c  caacccac   ca  a                       ----    --------------------------------------------------------ag        ---  ---a  a      --        ca  ga  g   g   u   cc 


Annotation confidence Not enough data
Do you think this miRNA is real?
Comments
This is a predicted homolog of a miRNA identified by Illumina deep sequencing in barley (Hordeum vulgare) [1].

Genome context
Chr5: 21907862-21908296 [-]

Database links

Mature osa-miR5078

Accession MIMAT0020575
Description Oryza sativa osa-miR5078 mature miRNA
Sequence 405 - CCUCGUUCGACCGUGGCAUUU - 425
Evidence not_experimental
Database links

References

  1. PubMed ID: 21352554
    Discovery of barley miRNAs through deep sequencing of short reads
    Schreiber AW, Shi BJ, Huang CY, Langridge P, Baumann U
    BMC Genomics (2011) 12:129