miRBase entry: bdi-MIR5069

Stem-loop bdi-MIR5069


Accession
MI0017971
Description
Brachypodium distachyon bdi-MIR5069 precursor miRNA


Sequence

cacuuauaucUAGGUUAUUGAUUUGACCAACaaaauauaaguuguguuuugucgguuaaauugaugacuuaugugcuauau
......(((.((((((((((((((((((.((((((((((...)))))))))).)))))))))))))))))).)))......

Structure
cacuua   c                  A          a 
      uau UAGGUUAUUGAUUUGACC ACaaaauaua  
      ||| |||||||||||||||||| |||||||||| g
      gug auucaguaguuaaauugg uguuuugugu  
uauauc   u                  c          u 


Annotation confidence Not enough data
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Comments
This is a predicted homolog of a miRNA identified by Illumina deep sequencing in barley (Hordeum vulgare) [1].

Genome context
4: 5340628-5340708 [-]

Database links

Mature bdi-miR5069

Accession MIMAT0020580
Description Brachypodium distachyon bdi-miR5069 mature miRNA
Sequence 11 - UAGGUUAUUGAUUUGACCAAC - 31
Evidence not_experimental

References

  1. PubMed ID: 21352554
    Discovery of barley miRNAs through deep sequencing of short reads
    Schreiber AW, Shi BJ, Huang CY, Langridge P, Baumann U
    BMC Genomics (2011) 12:129