Stem-loop osa-MIR5082

Accession

MI0017973

Description

Oryza sativa osa-MIR5082 precursor miRNA

Literature search

3 open access papers mention osa-MIR5082
(6 sentences)

Sequence

4 reads, 6 reads per million, 1 experiments

ggcgggcgggugagcgcggcggccaugguugcggcggugguggcgcgcggcggcggcggcggcuagggcucaggcggcuuggugcgggagagaggcggcggcgaaggggagagaucgcuucgagagagugauuuuauagcgaggggauuaggguuuagcucuagugggccaugggggauaguuaguggaccacuaugggccgggcuagaauuaguugggccuucgcgagcccaacuugugggcuaguuuuucgcuuguaaaaggccauggggggaggaggcggcgagcuaggguuucgacccucacgaacacuacuugaucuuauccgagcuugccguccggcggcgccgcggcggccggagucgccucuccgacauucgcgccgccaccgacguccucguacgguuggcgggaagguggcgcgcuuuguugggggaaagaggcggguucgguucccguggcagucgccggcggugagcgaugacgacugcccgcggucggagcgcgUGCGAUGAUGGCCGCGCGGGUUCAcccaaacaac
.......((((((((.((((((((((.(((((((((.(..((((.(((((..((((((.(((.(((((.(((((.(((((..((((((.(((((((..............((((((((((.....))))))))))...(((((((((((((..((((((((....((.((((((((..((.....))..)).)))))).)))))))))).))))))...))))))).((((((.....)))))).))))))).))))))..))))).((((((..((((.(..........).))))..)))))).........)))))))))).))).((((((((.(((((((((((((((.(((((((.((((((((((((((..(((((((((.(((.((.((......)).)).)))...)))))))))...)))))).....)))))))).))))))).))))))).)))))))))))))))).....)).))))))))))))).).))).)))))).)))))))).)).)))))))).......

Structure

ggcgggc        g  -        g      -   g gg    g     cg    -  gcggcuagggcucaggcggcuuggugcgggagagaggcggcggcgaaggggagagaucgcuucgagagagugauuuuauagcgaggggauuaggguuuagcucuagugggccaugggggauaguuaguggaccacuaugggccgggcuagaauuaguugggccuucgcgagcccaacuugugggcuaguuuuucgcuuguaaaaggccauggggggaggaggcggcgagcuaggguuucgacccucacgaacacuacuugaucuuauccga        u        -       c       g        -----      -uu         --a   a  u  uc 
       gggugagc cg gcggccau guugcg gcg u  uggc cgcgg  gcgg cg                                                                                                                                                                                                                                                                               gcuugccg ccggcggc gccgcgg ggccgga ucgccucu     ccgaca   cgcgccgcc   ccg cg cc  g
       |||||||| || |||||||| |||||| ||| |  |||| |||||  |||| ||                                                                                                                                                                                                                                                                               |||||||| |||||||| ||||||| ||||||| ||||||||     ||||||   |||||||||   ||| || ||   
       cccACUUG GC CGCCGGUA UAGCGU cgc a  gcug gcgcc  cguc gc                                                                                                                                                                                                                                                                               cgaguggc ggccgcug cggugcc uuggcuu ggcggaga     gguugu   gcgcggugg   ggc gu gg  u
caacaaa        G  G        G      g   g -g    -     --    a  --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------aguag        -        a       c       g        aaggg      uuc         aag   g  u  ca 

Annotation confidence Not enough data

Comments

This is a predicted homolog of a miRNA identified by Illumina deep sequencing in barley (Hordeum vulgare) [1].

Genome context

Chr11: 1286146-1286686 [+]

Mature osa-miR5082

• Accession: MIMAT0020582
• Description: Oryza sativa osa-miR5082 mature miRNA
• Sequence: 508 - UGCGAUGAUGGCCGCGCGGGUUCA - 531
• Evidence: not_experimental

References

1. PubMed ID: 21352554
   Discovery of barley miRNAs through deep sequencing of short reads
   Schreiber AW, Shi BJ, Huang CY, Langridge P, Baumann U
   BMC Genomics (2011) 12:129