miRBase entry: osa-MIR5082

Stem-loop osa-MIR5082


Accession
MI0017973
Description
Oryza sativa osa-MIR5082 precursor miRNA

Literature search
3 open access papers mention osa-MIR5082
(6 sentences)

Sequence

4 reads, 6 reads per million, 1 experiments
ggcgggcgggugagcgcggcggccaugguugcggcggugguggcgcgcggcggcggcggcggcuagggcucaggcggcuuggugcgggagagaggcggcggcgaaggggagagaucgcuucgagagagugauuuuauagcgaggggauuaggguuuagcucuagugggccaugggggauaguuaguggaccacuaugggccgggcuagaauuaguugggccuucgcgagcccaacuugugggcuaguuuuucgcuuguaaaaggccauggggggaggaggcggcgagcuaggguuucgacccucacgaacacuacuugaucuuauccgagcuugccguccggcggcgccgcggcggccggagucgccucuccgacauucgcgccgccaccgacguccucguacgguuggcgggaagguggcgcgcuuuguugggggaaagaggcggguucgguucccguggcagucgccggcggugagcgaugacgacugcccgcggucggagcgcgUGCGAUGAUGGCCGCGCGGGUUCAcccaaacaac
.......((((((((.((((((((((.(((((((((.(..((((.(((((..((((((.(((.(((((.(((((.(((((..((((((.(((((((..............((((((((((.....))))))))))...(((((((((((((..((((((((....((.((((((((..((.....))..)).)))))).)))))))))).))))))...))))))).((((((.....)))))).))))))).))))))..))))).((((((..((((.(..........).))))..)))))).........)))))))))).))).((((((((.(((((((((((((((.(((((((.((((((((((((((..(((((((((.(((.((.((......)).)).)))...)))))))))...)))))).....)))))))).))))))).))))))).)))))))))))))))).....)).))))))))))))).).))).)))))).)))))))).)).)))))))).......

Structure
ggcgggc        g  -        g      -   g gg    g     cg    -  gcggcuagggcucaggcggcuuggugcgggagagaggcggcggcgaaggggagagaucgcuucgagagagugauuuuauagcgaggggauuaggguuuagcucuagugggccaugggggauaguuaguggaccacuaugggccgggcuagaauuaguugggccuucgcgagcccaacuugugggcuaguuuuucgcuuguaaaaggccauggggggaggaggcggcgagcuaggguuucgacccucacgaacacuacuugaucuuauccga        u        -       c       g        -----      -uu         --a   a  u  uc 
       gggugagc cg gcggccau guugcg gcg u  uggc cgcgg  gcgg cg                                                                                                                                                                                                                                                                               gcuugccg ccggcggc gccgcgg ggccgga ucgccucu     ccgaca   cgcgccgcc   ccg cg cc  g
       |||||||| || |||||||| |||||| ||| |  |||| |||||  |||| ||                                                                                                                                                                                                                                                                               |||||||| |||||||| ||||||| ||||||| ||||||||     ||||||   |||||||||   ||| || ||   
       cccACUUG GC CGCCGGUA UAGCGU cgc a  gcug gcgcc  cguc gc                                                                                                                                                                                                                                                                               cgaguggc ggccgcug cggugcc uuggcuu ggcggaga     gguugu   gcgcggugg   ggc gu gg  u
caacaaa        G  G        G      g   g -g    -     --    a  --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------aguag        -        a       c       g        aaggg      uuc         aag   g  u  ca 


Annotation confidence Not enough data
Do you think this miRNA is real?
Comments
This is a predicted homolog of a miRNA identified by Illumina deep sequencing in barley (Hordeum vulgare) [1].

Genome context
Chr11: 1286146-1286686 [+]

Database links

Mature osa-miR5082

Accession MIMAT0020582
Description Oryza sativa osa-miR5082 mature miRNA
Sequence 508 - UGCGAUGAUGGCCGCGCGGGUUCA - 531
Evidence not_experimental
Database links

References

  1. PubMed ID: 21352554
    Discovery of barley miRNAs through deep sequencing of short reads
    Schreiber AW, Shi BJ, Huang CY, Langridge P, Baumann U
    BMC Genomics (2011) 12:129