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miRBase |
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Stem-loop sequence osa-MIR5082 |
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Accession | MI0017973 (change log) | ||||
Description | Oryza sativa miR5082 stem-loop | ||||
Literature search |
3 open access papers mention osa-MIR5082 | ||||
Stem-loop |
ggcgggcgggugagcgcggcggccaugguugcggcggugguggcgcgcggcggcggcggcggcuagggcucaggcggcuuggugcgggagagaggcggcggcgaaggggagagaucgcuucgagagagugauuuuauagcgaggggauuaggguuuagcucuagugggccaugggggauaguuaguggaccacuaugggccgggcuagaauuaguugggccuucgcgagcccaacuugugggcuaguuuuucgcuuguaaaaggccauggggggaggaggcggcgagcuaggguuucgacccucacgaacacuacuugaucuuauccga ug u - cg g ----- -uu --a a u uc
5' gcu ccg ccggcggc gccgcgg gccgga ucgccucu ccgaca cgcgccgcc ccg cg cc g
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3' cga ggc ggccgcug cggugcc uggcuu ggcggaga gguugu gcgcggugg ggc gu gg u
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------caacaaacccacuugggcgcgccgguaguagcgugcgcgaggcuggcgcccgucagcaguag gu - a cu g aaggg uuc aag g u ca
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Deep sequencing |
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Confidence |
Annotation confidence: not enough data
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Comments |
This is a predicted homolog of a miRNA identified by Illumina deep sequencing in barley (Hordeum vulgare) [1]. |
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Genome context |
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Database links |
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Mature sequence osa-miR5082 |
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Accession | MIMAT0020582 |
Sequence |
508 - ugcgaugauggccgcgcggguuca - 531 |
Deep sequencing | 4 reads, 1 experiments |
Evidence | not experimental |
Database links |
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References |
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1 |
PMID:21352554
"Discovery of barley miRNAs through deep sequencing of short reads"
BMC Genomics. 12:129(2011).
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