Stem-loop sequence ssc-mir-545

Accession

MI0017994 (change log)

Description

Sus scrofa miR-545 stem-loop

Gene family

MIPF0000098; mir-95

Stem-loop

   --         - u            auug     auaaa 
5'   uuaguaggc c caguaaauguuu    gauga     u
     ||||||||| | ||||||||||||    |||||     g
3'   aaucguccg g guuauuuacaaa    cuacu     a
   gc         u u            -caa     cagua 

Deep sequencing

98 reads, 0 reads per million, 11 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Sscrofa10.2; GCA_000003025.4): chrX: 67530196-67530274 [-]
• Overlapping transcripts:

  sense

  ENSSSCT00000021268 ; ssc-mir-545.1-201; exon 1

Clustered miRNAs

< 10kb from ssc-mir-545

• ssc-mir-374a: chrX: 67530361-67530440 [-]
• ssc-mir-545: chrX: 67530196-67530274 [-]

Database links

• EntrezGene:MIR545
• miRBase Tracker:MI0017994

Mature sequence ssc-miR-545-5p

• Accession: MIMAT0020593
• Previous IDs: ssc-miR-545*
• Sequence: 11 - ucaguaaauguuuauuggaug - 31
• Deep sequencing: 16 reads, 8 experiments
• Evidence: experimental; Illumina [1]

Mature sequence ssc-miR-545-3p

• Accession: MIMAT0020594
• Previous IDs: ssc-miR-545
• Sequence: 48 - aucaacaaacauuuauugugug - 69
• Deep sequencing: 78 reads, 9 experiments
• Evidence: experimental; Illumina [1]

References

1. PMID:21312241 "MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing" Li G, Li Y, Li X, Ning X, Li M, Yang G J Cell Biochem. 112:1318-1328(2011).