miRBase entry: ssc-mir-2320

Stem-loop ssc-mir-2320


Accession
MI0017997
Description
Sus scrofa ssc-mir-2320 precursor miRNA
Gene family
MIPF0001253; mir-2320

Literature search
5 open access papers mention ssc-mir-2320
(15 sentences)

Sequence

73 reads, 49 reads per million, 11 experiments
gcuguccccaUGGCACAGGGUCCAGCUGUCGGcuguaauacccgauggguCGAUGAUGGUCCCUGUGUUUGgggcgagcac
(((..(((((.(((((((((.(((..((((((((.............)))))))).))).))))))))))))))..)))..

Structure
--   gu     U         U   GC        guaau 
  gcu  cccca GGCACAGGG CCA  UGUCGGcu     a
  |||  ||||| ||||||||| |||  ||||||||     c
  cga  gggGU UUGUGUCCC GGU  GUAGCugg     c
ca   gc     -         U   -A        guagc 


Annotation confidence Not enough data
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Genome context
chr6: 60147823-60147903 [-]

Database links

Mature ssc-miR-2320-5p

Accession MIMAT0020597
Description Sus scrofa ssc-miR-2320-5p mature miRNA
Sequence 11 - UGGCACAGGGUCCAGCUGUCGG - 32
Evidence experimental
Illumina [1-3]

Mature ssc-miR-2320-3p

Accession MIMAT0020598
Description Sus scrofa ssc-miR-2320-3p mature miRNA
Sequence 51 - CGAUGAUGGUCCCUGUGUUUG - 71
Evidence experimental
Illumina [1-3]

References

  1. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328

  2. PubMed ID: 22953717
    Profiling microRNAs in lung tissue from pigs infected with Actinobacillus pleuropneumoniae
    Podolska A, Anthon C, Bak M, Tommerup N, Skovgaard K, Heegaard PM, Gorodkin J, Cirera S, Fredholm M
    BMC Genomics (2012) 13:459

  3. PubMed ID: 24499489
    Exploration of microRNAs in porcine milk exosomes
    Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
    BMC Genomics (2014) 15:100