miRBase entry: rgl-MIR5140

Stem-loop rgl-MIR5140


Accession
MI0018052
Description
Rehmannia glutinosa rgl-MIR5140 precursor miRNA

Literature search
1 open access papers mention rgl-MIR5140
(3 sentences)

Sequence

gaucguaguauccacucgagcgaucaccgguuccaccuuuguaauggguuuggcugcccuaggccuagccgaugucucugcaaauuugacgcgaacagccucuGCUGGUGAAGAUUUGGUGgagaugcgacg
..(((((...(((((.(((((..((((((((......((((((..((..(((((((((...)))..))))))..))..))))))...((.((.....)).)).)))))))).).)))))))))..)))))..

Structure
ga     gua     u    - ga        -------------uccacc      au  gu      --   c 
  ucgua   uccac cgag c  ucaccggu                   uuugua  gg  uuggcu  gcc  
  |||||   ||||| |||| |  ||||||||                   ||||||  ||  ||||||  ||| u
  agcgu   agGUG GUUU G  AGUGGUCG                   aaacgu  cu  agccga  cgg  
gc     -ag     -    A -A        ucuccgacaagcgcaguuu      cu  gu      uc   a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature rgl-miR5140

Accession MIMAT0020651
Description Rehmannia glutinosa rgl-miR5140 mature miRNA
Sequence 104 - GCUGGUGAAGAUUUGGUG - 121
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21439075
    Differential miRNA expression in Rehmannia glutinosa plants subjected to continuous cropping
    Yang Y, Chen X, Chen J, Xu H, Li J, Zhang Z
    BMC Plant Biol (2011) 11:53