miRBase entry: osa-MIR5147

Stem-loop osa-MIR5147


Accession
MI0018059
Description
Oryza sativa osa-MIR5147 precursor miRNA


Sequence

16 reads, 12 reads per million, 2 experiments
cuaguacucgcuccauccacgagaguuguacauauaacuuuuuucacagugaccaaggagaacacuaacuccucugauccauuuauucaucuauauggauucauacgcagugucguuucguuuuucccgcauaucgcgcauacgcaaccaacagccccgcccucgugcacuggugccgcaugcaugcaguugccuugccaauugcaugugcaugcucaacugguuggcugcucgggccgcguuaucaaauuaauccauccgcagccauacgauuacugcuucgaggcacaaacaaaauacguucaacucuuguggauaaacugagaaauguuaugcgcACAACUCUUGUGGAUGGAGGGaguaaug
....(((((.(((((((((((((((((((.(.((((((.(((((((..(((.((.(((((........)))))..(((((((.((......)).))))))).....((((((((((............((((...(((.....((........))..)))....))))((((((...(((((((((((((((......))))))))..)))))))...))))))(((((((..(((....((((......))))...)))))))))).)))).)))))).....)))))...........(((((.(....))))))....))))))).)))))).).))))))))))))))))))).)))))...

Structure
cuag     g                   a a      u       ------------------------------ca   a  aaggagaacacuaacuccucugauccauuuauucaucuauauggauucauac      -    uucguuuuucccgcauaucgcgcauacgcaaccaacagccccgcccucgugc      gcc       --        cc 
    uacuc cuccauccacgagaguugu c uauaac uuuuuca                                gug cc                                                    gcagug ucgu                                                    acuggu   gcaugca  ugcaguug  u
    ||||| ||||||||||||||||||| | |||||| |||||||                                ||| ||                                                    |||||| ||||                                                    ||||||   |||||||  ||||||||   
    augaG GAGGUAGGUGUUCUCAACA g guauug aaagagu                                cac gg                                                    cgucau agca                                                    ugguca   cguacgu  acguuaac  u
-gua     G                   c c      u       caaauagguguucucaacuugcauaaaacaaa   -  -----------------------------------------------agcuu      u    --------uaccgacgccuaccuaauuaaacuauugcgccgggcucgucggu      acu       gu        cg 


Annotation confidence Not enough data
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Genome context
Chr2: 17049859-17050224 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from osa-MIR5147
Name Accession Chromosome Start End Strand Confidence




Database links

Mature osa-miR5147

Accession MIMAT0021092
Description Oryza sativa osa-miR5147 mature miRNA
Sequence 339 - ACAACUCUUGUGGAUGGAGGG - 359
Evidence experimental
Illumina [1-2]
Database links

References

  1. PubMed ID: 21525786
    Genome-wide discovery and analysis of microRNAs and other small RNAs from rice embryogenic callus
    "Chen CJ, liu Q, Zhang YC, Qu LH, Chen YQ, Gautheret D"
    "RNA Biol (2011) 8:538-547

  2. PubMed ID: 22158467
    Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage
    "Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ"
    "Plant Cell (2011) 23:4185-4207