miRBase entry: osa-MIR5149

Stem-loop osa-MIR5149


Accession
MI0018064
Description
Oryza sativa osa-MIR5149 precursor miRNA

Literature search
1 open access papers mention osa-MIR5149
(1 sentences)

Sequence

18 reads, 18 reads per million, 2 experiments
cauauaggucccaaaucgcaacaacuccuccaaaauccuacguggcgcugauguggcgugccacacgaacgugacguggcauuuaaaaauuuuccuuuuccuuuuuuuucuuuucuucuucucuuuuuuuuucuuuuauucucuucucuuuucucugugaccugagcaacccguguagcgguggccuauagcugcagugagagcaagaaaaggagaagaaaggaaaaaaaagagaauaaaaaagggaaaugaaaauuuuuuaagugggucucauuugucauucaauauuaugccaugucaugucugugugucauugccacaucagugccauguaagauccugGAGGAGCUGUGACGAUUUGGGAccuacaugacac
(((.((((((((((((((..(((.((((((((..(((.((((((((((((((((((((((.((((((.((((((((((((((..((((((((((.((((((((((((...........(((((((((((((((((((.(((((((.(((((((((..(((.(((.((.((((.....).))).))...))).).))..))))).))))..)))))))))))))))))))))))))).)))))))))))).))))))))))((((((.....))))))............)))))))))))))).)))))).)).)))))))))))))))))))).)))..)))))))).)))..)))))))))))))).)))....

Structure
----   a              ca   a        aa   c                    -  c      a              ---------------------------uu          c            uucuuuucuuc                   a       -c    -     ug  - c   --a  a   - g 
    cau uaggucccaaaucg  aca cuccucca  auc uacguggcgcugauguggcg ug cacacg acgugacguggcau                             aaaaauuuuc uuuuccuuuuuu           uucucuuuuuuuuucuuuu uucucuu  ucuu uucuc  ug a cug   gc acc c u
    ||| ||||||||||||||  ||| ||||||||  ||| |||||||||||||||||||| || |||||| ||||||||||||||                             |||||||||| ||||||||||||           ||||||||||||||||||| |||||||  |||| |||||  || | |||   || ||| | g
    gua auccAGGGUUUAGC  UGU GAGGAGgu  uag auguaccgugacuacaccgu ac gugugu uguacuguaccgua                             uuuuuaaaag aaagggaaaaaa           aagagaaaaaaaaggaaag aagagga  agaa gagag  ac u gau   cg ugg g u
caca   c              AG   C        cc   a                    u  u      c              uuauaacuuacuguuuacucugggugaau          u            ----------u                   -       aa    c     ug  g c   auc  g   c a 


Annotation confidence Not enough data
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Genome context
Chr3: 29756516-29756891 [-]

Database links

Mature osa-miR5149

Accession MIMAT0021097
Description Oryza sativa osa-miR5149 mature miRNA
Sequence 343 - GAGGAGCUGUGACGAUUUGGGA - 364
Evidence experimental
Illumina [1]
Database links

References

  1. PubMed ID: 21525786
    Genome-wide discovery and analysis of microRNAs and other small RNAs from rice embryogenic callus
    "Chen CJ, liu Q, Zhang YC, Qu LH, Chen YQ, Gautheret D"
    "RNA Biol (2011) 8:538-547