miRBase entry: osa-MIR5160

Stem-loop osa-MIR5160


Accession
MI0018076
Description
Oryza sativa osa-MIR5160 precursor miRNA
Gene family
MIPF0001604; MIR5160

Literature search
1 open access papers mention osa-MIR5160
(4 sentences)

Sequence

23 reads, 18 reads per million, 2 experiments
cuuuuugcagaaauauaccgucgaucucacauaaccauugagcaugacgucgugggcgguaucgugcagggaaagccggucucgcugauugaaauagcgauaccggacugccaccgauucaauuagugauuaauuaucaugauuagcgauuaauuaauuaauuauuaaucacuaaucaggauaauuagucacuaaauauuauuaguuaauaguuaauuagguaauuaaucacuaauuaaaaaguggagaucauugcaucagugagacagugucgcuguuucaaucagcgagaccgcucuuccguuccgcgagacugcgcggucucgcccuuuugcgcaacgguugugCGAGAUCGAUGGUAUAUUUCUGcaaaacaauuu
..((((((((((((((((((((((((((.(((((((.(((.(((.((......((((((.((((((((((((((((.(((((((((((((((((((((((((((((.......)))......((((((((((((((((.(((((((.(((((((.........))))))).))))))).)))))))))))))))).....((((.(((((.....))))).))))....((((........))))....((((((...))))))....))))))))))))))))))))))))))))).))))...........))))))))).)))))))).))).))).))))))).))))))))))))))))))))))))))......

Structure
----cu                          a       a   a   u  cgucgu      u         -----------    -   c                          ------------------------------------------------------cggacugccaccgauucaa                a       c       uaa 
      uuuugcagaaauauaccgucgaucuc cauaacc uug gca ga      gggcgg aucgugcag           ggaa agc ggucucgcugauugaaauagcgauac                                                                         uuagugauuaauuauc ugauuag gauuaau   u
      |||||||||||||||||||||||||| ||||||| ||| ||| ||      |||||| |||||||||           |||| ||| ||||||||||||||||||||||||||                                                                         |||||||||||||||| ||||||| |||||||   u
      aaaacGUCUUUAUAUGGUAGCUAGAG guguugg aac cgu uu      cccgcu uggcgcguc           ccuu ucg ccagagcgacuaacuuugucgcugug                                                                         aaucacugauuaauag acuaauc cuaauua   a
uuuaac                          C       c   g   u  ------      c         agagcgccuug    c   -                          acagagugacuacguuacuagaggugaaaaauuaaucacuaauuaauggauuaauugauaauugauuauuaua                g       a       uua 


Annotation confidence Not enough data
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Genome context
Chr12: 2039472-2039851 [-]

Database links

Mature osa-miR5160

Accession MIMAT0021113
Description Oryza sativa osa-miR5160 mature miRNA
Sequence 348 - CGAGAUCGAUGGUAUAUUUCUG - 369
Evidence experimental
Illumina [1]
Database links

References

  1. PubMed ID: 21525786
    Genome-wide discovery and analysis of microRNAs and other small RNAs from rice embryogenic callus
    "Chen CJ, liu Q, Zhang YC, Qu LH, Chen YQ, Gautheret D"
    "RNA Biol (2011) 8:538-547