Stem-loop bdi-MIR169d

Accession

MI0018079

Description

Brachypodium distachyon bdi-MIR169d precursor miRNA

Gene family

MIPF0000012; MIR169_1

Literature search

3 open access papers mention bdi-MIR169d
(27 sentences)

Sequence

auggagauggagagccucccuugauuuuggUAGCCAAGAAUGACUUGCCUAugcuugcccucugcuaaccagcuagccaugcaugguaaccaauggacaaauuucuugugguuggcgugguuagugugguugcaugggugggucuucuuggcuagccagagcggcucucauccaccaugccaggcca
((((.((((.((((((.(.......(((((((((((((((.(((((((((((((..(((...((((((((((((((((((((((((...)).)))...........)))))))))).))))))))).))).)))))))))))))))))))))).))))))).))))))))))..)))).........

Structure

---------    -a    g      u ccuugau      -         U             uu   cuc         -          -----------   -  u 
         augg  gaug agagcc c       uuuggU AGCCAAGAA GACUUGCCUAugc  gcc   ugcuaacca gcuagccaug           cau gg  
         ||||  |||| |||||| |       |||||| ||||||||| |||||||||||||  |||   ||||||||| ||||||||||           ||| || a
         uacc  cuac ucucgg g       agaccg ucgguucuu cuggguggguacg  ugg   gugauuggu cgguuggugu           gua cc  
accggaccg    ac    -      c -------      a         -             -u   --u         g          ucuuuaaacag   a  a 

Annotation confidence Not enough data

Genome context

4: 26242409-26242595 [+]

Mature bdi-miR169d

• Accession: MIMAT0020654
• Description: Brachypodium distachyon bdi-miR169d mature miRNA
• Sequence: 31 - UAGCCAAGAAUGACUUGCCUA - 51
• Evidence: not_experimental

References

1. PubMed ID: 21371551
   Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
   "Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G"
   "Genomics (2011) 97:282-293