Stem-loop sequence bdi-MIR166d

Accession

MI0018089 (change log)

Description

Brachypodium distachyon miR166d stem-loop

Gene family

MIPF0000004; MIR166

Literature search

2 open access papers mention bdi-MIR166d
(16 sentences)

Stem-loop

   -----ucgcuggugcauguauggcgca    a        uu        g      uagcuagcagcuagcacggaucaucca 
5'                            guug ggggaaug  gucugguu gagacc                           u
                              |||| ||||||||  |||||||| ||||||                            
3'                            caac ccccuuac  cggaccag cuuugg                           a
   cucgcuucuucuagcuagcucaacucu    c        uu        g      cgcgcguauacgucgcagcuuagcuag 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Bd21; GCA_000005505.1): 1: 71419377-71419541 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0018089

Mature sequence bdi-miR166d-5p

• Accession: MIMAT0027046
• Sequence: 30 - ggaauguugucugguuggaga - 50
• Evidence: experimental; Illumina [2]

Mature sequence bdi-miR166d-3p

• Accession: MIMAT0020664
• Sequence: 113 - ucggaccaggcuucauucccc - 133
• Evidence: experimental; Illumina [2]

References

1. PMID:21371551 "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs" Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G Genomics. 97:282-293(2011).
2. PMID:23264558 "Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon" Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E Mol Plant. 6:423-443(2013).