Stem-loop bdi-MIR166b

Accession

MI0018092

Description

Brachypodium distachyon bdi-MIR166b precursor miRNA

Gene family

MIPF0000004; MIR166

Literature search

2 open access papers mention bdi-MIR166b
(16 sentences)

Sequence

gcuagagagggagccuuuuucguuuugaggGGAAUGUUGUCUGGCUCGGGGuucucuuuauuucuaugccucucucuaucccccccuccucaaucucucuagcuuugauuggaucgagagaagaucgaucgaucgauccaagaagaguucugagaagggggaugaagagaguagacguauguguguagaucUCGGACCAGGCUUCAUUCCCCccaaauacaagggcucccaugaucucugccuc
((.(((((((((((((((.....((((.((((((((..((((((.((((((((..(..(((.((((...((((((.((((((((...........((((.((((((..(((((((((..((.......))..)))))))))..))))))..)))).)))))))).)))))))))).))).....)..)))))))).))))))..)))))))).))))...))))))))))....)))))))...

Structure

---  u     ----          uucgu    a        UU      C        cu ---uu   u    ugc      c        ccuccucaauc    -u      ga         ga  ag 
   gc agaga    gggagccuuu     uuug ggGGAAUG  GUCUGG UCGGGGuu  c     uau ucua   cucucu uauccccc           ucuc  agcuuu  uuggaucga  ga  a
   || |||||    ||||||||||     |||| ||||||||  |||||| ||||||||  |     ||| ||||   |||||| ||||||||           ||||  ||||||  |||||||||  ||  u
   cg ucucu    cccucgggaa     aaac CCCCUUAC  CGGACC GGCUcuag  g     aug agau   gagaga guaggggg           agag  uugaga  aaccuagcu  cu  c
cuc  -     agua          --cau    c        UU      A        au ugugu   c    ---      a        ----------a    uc      ag         ag  ag 

Annotation confidence Not enough data

Genome context

1: 30655617-30655860 [-]

Mature bdi-miR166b-3p

• Accession: MIMAT0020667
• Description: Brachypodium distachyon bdi-miR166b-3p mature miRNA
• Sequence: 192 - UCGGACCAGGCUUCAUUCCCC - 212
• Evidence: experimental ; Illumina [2]

Mature bdi-miR166b-5p

• Accession: MIMAT0027048
• Description: Brachypodium distachyon bdi-miR166b-5p mature miRNA
• Sequence: 31 - GGAAUGUUGUCUGGCUCGGGG - 51
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 21371551
   Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
   "Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G"
   "Genomics (2011) 97:282-293


2. PubMed ID: 23264558
   Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
   "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
   "Mol Plant (2013) 6:423-443