miRBase entry: bdi-MIR167d

Stem-loop bdi-MIR167d


Accession
MI0018102
Description
Brachypodium distachyon bdi-MIR167d precursor miRNA
Gene family
MIPF0000023; MIR167_1

Literature search
3 open access papers mention bdi-MIR167d
(8 sentences)

Sequence

uggacggcucaauuugauggugugagagguUGAAGCUGCCAGCAUGAUCUGAucaccguccaacguaaccgaacacaugucgaucgacuuccgauugcgccgguuaucuugguaggaauauauauauaugagcuuccauugcaaggguucuucAGAUCAUGUUGCAGCUUCACucucucaucaccaccgaaagauccaaauuaa
.....((.((..((((.((((((((((((.(((((((((.((((((((((((...((..((((.(((((((.......((((((((.....)))))).))))))))).))))..)).............((((((.........)))))).))))))))))))))))))))).))))))).))))).)))).)).)).......

Structure
--uggac  c  aa    a     -       u         C            --------------------------------uca  gu    c       aacacau  -      a 
       gg uc  uuug uggug ugagagg UGAAGCUGC AGCAUGAUCUGA                                   cc  ccaa guaaccg       gu cgaucg c
       || ||  |||| ||||| ||||||| ||||||||| ||||||||||||                                   ||  |||| |||||||       || |||||| u
       cc ag  aagc accac acucucu ACUUCGACG UUGUACUAGAcu                                   gg  gguu uauuggc       cg guuagc u
aauuaaa  u  -a    c     u       C         -            ucuugggaacguuaccuucgaguauauauauauaa  au    c       -------  c      c 


Annotation confidence Not enough data
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Genome context
3: 3632405-3632608 [-]

Database links

Mature bdi-miR167d-5p

Accession MIMAT0020677
Description Brachypodium distachyon bdi-miR167d-5p mature miRNA
Sequence 31 - UGAAGCUGCCAGCAUGAUCUGA - 52
Evidence experimental
Illumina [2]

Mature bdi-miR167d-3p

Accession MIMAT0027056
Description Brachypodium distachyon bdi-miR167d-3p mature miRNA
Sequence 154 - AGAUCAUGUUGCAGCUUCAC - 173
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 21371551
    Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
    "Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G"
    "Genomics (2011) 97:282-293

  2. PubMed ID: 23264558
    Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
    "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
    "Mol Plant (2013) 6:423-443