Accession
MI0018108
Description
Brachypodium distachyon
bdi-MIR396e precursor miRNA
Literature search
3 open access papers mention bdi-MIR396e
(5 sentences)
(5 sentences)
Sequence
163387
reads,
2065.0
reads per million, 21 experiments
cucgagcaaguaguuaguccaugccauuccuUUCCACAGCUUUCUUGAACUucccuucccggacugcggccuguagcucucucgcccucuugaucucccgucgaucuccacugguagcagcugggagagcagggaagaggaggGUCAAGAAAGCUGUGGGAAGAaauggcauaaccaggacuuugauugaauucaguucau
...((((...((((((((((((((((((.(((((((((((((((((((.(((((((((((((.(....)))....((((((((((((....((((.......))))......)).....)).)))))))).)))))).))))).))))))))))))))))))).)))))))).....)))))..)))))......))))..
...((((...((((((((((((((((((.(((((((((((((((((((.(((((((((((((.(....)))....((((((((((((....((((.......))))......)).....)).)))))))).)))))).))))).))))))))))))))))))).)))))))).....)))))..)))))......))))..
Structure
cuc ---aag -- ----- c A - ggacugcggccugua - ----- --ucuu uc gagc uaguu agucc augccauu cuUUCCACAGCUUUCUUGA CUucc cuuccc gcucucuc gc cc gauc c |||| ||||| ||||| |||||||| ||||||||||||||||||| ||||| |||||| |||||||| || || |||| c cuug guuag ucagg uacgguaa GAAGGGUGUCGAAAGAACU ggagg gaaggg cgagaggg cg gg cuag g -ua acuuaa uu accaa A G a --------------a u acgau ucaccu cu
Annotation confidence
High
Do you think this miRNA is real?
Genome context
3: 54962836-54963036 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from bdi-MIR396e
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature bdi-miR396e-5p
| Accession | MIMAT0020683 |
| Description | Brachypodium distachyon bdi-miR396e-5p mature miRNA |
| Sequence | 32 - UUCCACAGCUUUCUUGAACU - 51 |
| Evidence |
experimental
Illumina [2] |
Mature bdi-miR396e-3p
| Accession | MIMAT0027060 |
| Description | Brachypodium distachyon bdi-miR396e-3p mature miRNA |
| Sequence | 144 - GUCAAGAAAGCUGUGGGAAGA - 164 |
| Evidence |
experimental
Illumina [2] |
References
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