Stem-loop sequence bdi-MIR166e

Accession

MI0018112 (change log)

Description

Brachypodium distachyon miR166e stem-loop

Gene family

MIPF0000004; MIR166

Literature search

2 open access papers mention bdi-MIR166e
(16 sentences)

Stem-loop

   --------   aua   aagg        uuu     u          uu      cu      ---g  -         agaa 
5'         ggg   gca    gggagcuu   uacuu gaggggaaug  gucugg  cgaggu    cu gagaucgag    c
           |||   |||    ||||||||   ||||| ||||||||||  ||||||  ||||||    || |||||||||    u
3'         ucc   ugu    cccucgaa   augaa cuccccuuac  cggacc  gcucua    ga cucuagcuu    u
   ucuuagcg   -gg   ---g        ---     -          uu      ag      guua  u         aaag 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Bd21; GCA_000005505.1): 3: 51437868-51438018 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0018112

Mature sequence bdi-miR166e-5p

• Accession: MIMAT0027063
• Sequence: 35 - ggaauguugucuggcucgagg - 55
• Evidence: experimental; Illumina [2]

Mature sequence bdi-miR166e-3p

• Accession: MIMAT0020687
• Sequence: 98 - cucggaccaggcuucauuccc - 118
• Evidence: experimental; Illumina [2]

References

1. PMID:21371551 "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs" Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G Genomics. 97:282-293(2011).
2. PMID:23264558 "Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon" Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E Mol Plant. 6:423-443(2013).