Stem-loop bdi-MIR169e

Accession

MI0018114

Description

Brachypodium distachyon bdi-MIR169e precursor miRNA

Literature search

4 open access papers mention bdi-MIR169e
(33 sentences)

Sequence

ccuuacauggugauaagggguuuggcccugaUAGCCAAGGAUGACUUGCCUGugcauguccucccuugaucgcuugcauaauuucauauaugcaugugaucucgauuuaucacaGGCAGUCUCCUUGGCUAGCcugggugccucuuauccuccaugcuaggccu
(((..(((((.((((((((((...((((...((((((((((.((((.(((((((.(((...((....((((((.((((((........)))))).))))))..))..))))))))))))))))))))))))....))))))))))))))..)))))..)))...

Structure

---   ua     -u          uug    -uga          U    U       c   ucc  ccuu      u      auu 
   ccu  caugg  gauaaggggu   gccc    UAGCCAAGGA GACU GCCUGug aug   uc    gaucgc ugcaua   u
   |||  |||||  ||||||||||   ||||    |||||||||| |||| ||||||| |||   ||    |||||| ||||||    
   gga  guacc  cuauucuccg   uggg    AUCGGUUCCU CUGA CGGacac uau   ag    cuagug acguau   c
ucc   uc     uc          ---    ucCG          -    -       -   -uu  --cu      u      aua 

Annotation confidence Not enough data

Genome context

3: 43441526-43441689 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from bdi-MIR169e

Mature bdi-miR169e-5p

• Accession: MIMAT0020689
• Description: Brachypodium distachyon bdi-miR169e-5p mature miRNA
• Sequence: 32 - UAGCCAAGGAUGACUUGCCUG - 52
• Evidence: experimental ; Illumina [2]

Mature bdi-miR169e-3p

• Accession: MIMAT0027065
• Description: Brachypodium distachyon bdi-miR169e-3p mature miRNA
• Sequence: 115 - GGCAGUCUCCUUGGCUAGC - 133
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 21371551
   Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
   "Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G"
   "Genomics (2011) 97:282-293


2. PubMed ID: 23264558
   Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
   "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
   "Mol Plant (2013) 6:423-443