miRBase entry: bdi-MIR398a

Stem-loop bdi-MIR398a


Accession
MI0018116
Description
Brachypodium distachyon bdi-MIR398a precursor miRNA
Gene family
MIPF0000107; MIR398

Literature search
3 open access papers mention bdi-MIR398a
(4 sentences)

Sequence

aagaacagacagcacaugcgaggaaguuccugcagggucgaauugggaacacaugagauggaugguccgcugagcucugagcucgagcucggccaUGUGUUCUCAGGUCGCCCCUGuugggucuuccgugccauggauugaugauugccu
.....((..(((..((((((.(((((.(((.((((((.(((.(((((((((((((....(((...)))(((((((((.......)))))))))))))))))))))).))).)))))).))).))))).)).))))..))).)).......

Structure
--aagaa  ga   ca    -  a     u   u      u   a             agauggauggucc         ug 
       ca  cag  caug cg ggaag ucc gcaggg cga uugggaacacaug             gcugagcuc  a
       ||  |||  |||| || ||||| ||| |||||| ||| |||||||||||||             |||||||||  g
       gu  guu  guac gu ccuuc ggg uGUCCC GCU GACUCUUGUGUac             cggcucgag  c
uccguua  -a   ag    c  g     u   u      C   G             -------------         cu 


Annotation confidence Not enough data
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Genome context
2: 35924413-35924562 [-]

Database links

Mature bdi-miR398a

Accession MIMAT0020691
Description Brachypodium distachyon bdi-miR398a mature miRNA
Sequence 96 - UGUGUUCUCAGGUCGCCCCUG - 116
Evidence not_experimental

References

  1. PubMed ID: 21371551
    Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
    "Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G"
    "Genomics (2011) 97:282-293