miRBase entry: bdi-MIR159a

Stem-loop bdi-MIR159a


Accession
MI0018117
Description
Brachypodium distachyon bdi-MIR159a precursor miRNA
Gene family
MIPF0000010; MIR159


Sequence

gggcaagcgaaagauauagacaagaagaagAGCUCCCUUCGAUCCAAUCcaggaggggaaguggucggaugcagcugccgguucauggauaccugucuggugcaugcagugugguaauagccugcgcaccugcaucgguuugcaugacccgggagaugaaccugccagcgucuuucccucgugCUUGGAUUGAAGGGAGCUCUcucuccccccucucucucucucccucucucu
(((..((.((.(((........(((.((.((((((((((((((((((..((.(((((((((((((.((.(.((.((.((((.(((((.(.((((((..(((((..((((.((.......))))))))))).)))..))).).))))).)))).)).))).)).))))....))))))))).)).)))))))))))))))))))))))......))).)).))..))).......

Structure
-------   ca  c  a   uauagaca   a  a                  UC  g         ----    c  a g  g  g    u     g u   --   cu     au    u  gg 
       ggg  ag ga aga        aga ga gAGCUCCCUUCGAUCCAA  ca gaggggaag    uggu gg u ca cu ccgg ucaug a acc  ugu  ggugc  gcag gu  u
       |||  || || |||        ||| || ||||||||||||||||||  || |||||||||    |||| || | || || |||| ||||| | |||  |||  |||||  |||| ||  a
       ccc  uc cu ucu        ucu cU CUCGAGGGAAGUUAGGUU  gu cucccuuuc    accg cc a gu ga ggcc aguac u ugg  acg  ccacg  cguc cg  a
ucucucu   uc  u  c   --cccccc   -  -                  -C  g         ugcg    u  a -  a  g    c     g u   cu   -u     --    -  au 


Annotation confidence Not enough data
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Genome context
2: 5602219-5602452 [+]

Database links

Mature bdi-miR159a-3p

Accession MIMAT0020692
Description Brachypodium distachyon bdi-miR159a-3p mature miRNA
Sequence 184 - CUUGGAUUGAAGGGAGCUCU - 203
Evidence experimental
Illumina [2]

Mature bdi-miR159a-5p

Accession MIMAT0027066
Description Brachypodium distachyon bdi-miR159a-5p mature miRNA
Sequence 31 - AGCUCCCUUCGAUCCAAUC - 49
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 21371551
    Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
    "Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G"
    "Genomics (2011) 97:282-293

  2. PubMed ID: 23264558
    Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
    "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
    "Mol Plant (2013) 6:423-443