miRBase entry: bdi-MIR393a

Stem-loop bdi-MIR393a


Accession
MI0018119
Description
Brachypodium distachyon bdi-MIR393a precursor miRNA
Gene family
MIPF0000083; MIR393

Literature search
2 open access papers mention bdi-MIR393a
(5 sentences)

Sequence

ugagagcgagagggcaacaaugucuuggggaagcaUCCAAAGGGAUCGCAUUGAUCcuucgacuccauuaaugguguucgucaucgucugcugauugucgacgacggaucaugcgauccuuuuggaggcuuccucuagccauuacuacacuaagcauuc
.(((.((...((......((((.((.((((((((.((((((((((((((((.(((((..((((.(((....))).).)))...(((((.((.....)).))))).))))))))))))))))))))).)))))))).)).))))......))..)).)))

Structure
u   a  gag  ggcaac    u  u        a                U     -----------------------uu   - u   u 
 gag gc   ag      aaug cu ggggaagc UCCAAAGGGAUCGCAU GAUCc                         cga c cca u
 ||| ||   ||      |||| || |||||||| |||||||||||||||| |||||                         ||| | |||  
 cuu cg   uc      uuac ga cuccuucg agguuuuccuagcgua cuagg                         gcu g ggu a
-   a  -aa  acauca    c  u        g                -     cagcagcuguuagucgucugcuacu   u u   a 


Annotation confidence Not enough data
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Genome context
2: 2001005-2001163 [-]

Database links

Mature bdi-miR393a

Accession MIMAT0020694
Description Brachypodium distachyon bdi-miR393a mature miRNA
Sequence 36 - UCCAAAGGGAUCGCAUUGAUC - 56
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21371551
    Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
    "Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G"
    "Genomics (2011) 97:282-293

  2. PubMed ID: 19772667
    Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response
    Zhang J, Xu Y, Huan Q, Chong K
    BMC Genomics (2009) 10:449