Stem-loop bdi-MIR393b

Accession

MI0018123

Description

Brachypodium distachyon bdi-MIR393b precursor miRNA

Literature search

2 open access papers mention bdi-MIR393b
(5 sentences)

Sequence

163661 reads, 2037.0 reads per million, 21 experiments

gcuggcaaauuaguguaagcuucaggaagcuaguggaggaCUCCAAAGGGAUCGCAUUGAUCUcaucagcugcauccaagcaugaaucaacggauggauggaucgaugcauaugcaagaUCAGUGCAAUCCCUUUGGAAUUcucgacucgccucugccucggucggucacgcgc
((((((..(((((.((........(((.((.(((.(((((.(((((((((((.((((((((((...((..((((((....(((..(((....)))..)))....))))))..))..)))))))))).))))))))))).))))).))).)).))))))).)))..)))).))..

Structure

--  -    aa   -  u  aagcuuca   a  u   g     C           C          cau  gc      caag   ga   a 
  gc uggc  auu ag gu        gga gc agu gagga UCCAAAGGGAU GCAUUGAUCU   ca  ugcauc    cau  auc a
  || ||||  ||| || ||        ||| || ||| ||||| ||||||||||| ||||||||||   ||  ||||||    |||  |||  
  cg acug  ugg uc cg        ucu cg uca cucUU AGGUUUCCCUA CGUGACUaga   gu  acguag    gua  uag c
cg  c    gc   c  -  --------   c  c   g     A           A          -ac  au      cuag   gg   g 

Annotation confidence High

Genome context

5: 27613816-27613989 [+]

Mature bdi-miR393b-5p

• Accession: MIMAT0020698
• Description: Brachypodium distachyon bdi-miR393b-5p mature miRNA
• Sequence: 41 - CUCCAAAGGGAUCGCAUUGAUCU - 63
• Evidence: experimental ; Illumina [2]

Mature bdi-miR393b-3p

• Accession: MIMAT0027070
• Description: Brachypodium distachyon bdi-miR393b-3p mature miRNA
• Sequence: 120 - UCAGUGCAAUCCCUUUGGAAUU - 141
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 21371551
   Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
   "Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G"
   "Genomics (2011) 97:282-293


2. PubMed ID: 23264558
   Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
   "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
   "Mol Plant (2013) 6:423-443