miRBase entry: bdi-MIR393b

Stem-loop bdi-MIR393b


Accession
MI0018123
Description
Brachypodium distachyon bdi-MIR393b precursor miRNA
Gene family
MIPF0000083; MIR393

Literature search
2 open access papers mention bdi-MIR393b
(5 sentences)

Sequence

gcuggcaaauuaguguaagcuucaggaagcuaguggaggacUCCAAAGGGAUCGCAUUGAUCucaucagcugcauccaagcaugaaucaacggauggauggaucgaugcauaugcaagaUCAGUGCAAUCCCUUUGGAAUucucgacucgccucugccucggucggucacgcgc
((((((..(((((.((........(((.((.(((.(((((.(((((((((((.((((((((((...((..((((((....(((..(((....)))..)))....))))))..))..)))))))))).))))))))))).))))).))).)).))))))).)))..)))).))..

Structure
--  -    aa   -  u  aagcuuca   a  u   g     c           C          cau  gc      caag   ga   a 
  gc uggc  auu ag gu        gga gc agu gagga UCCAAAGGGAU GCAUUGAUCu   ca  ugcauc    cau  auc a
  || ||||  ||| || ||        ||| || ||| ||||| ||||||||||| ||||||||||   ||  ||||||    |||  |||  
  cg acug  ugg uc cg        ucu cg uca cucuU AGGUUUCCCUA CGUGACUaga   gu  acguag    gua  uag c
cg  c    gc   c  -  --------   c  c   g     A           A          -ac  au      cuag   gg   g 


Annotation confidence Not enough data
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Genome context
5: 27613816-27613989 [+]

Database links

Mature bdi-miR393b-5p

Accession MIMAT0020698
Description Brachypodium distachyon bdi-miR393b-5p mature miRNA
Sequence 42 - UCCAAAGGGAUCGCAUUGAUC - 62
Evidence experimental
Illumina [2]

Mature bdi-miR393b-3p

Accession MIMAT0027070
Description Brachypodium distachyon bdi-miR393b-3p mature miRNA
Sequence 120 - UCAGUGCAAUCCCUUUGGAAU - 140
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 21371551
    Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
    "Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G"
    "Genomics (2011) 97:282-293

  2. PubMed ID: 23264558
    Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
    "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
    "Mol Plant (2013) 6:423-443