miRBase entry: bdi-MIR395c

Stem-loop bdi-MIR395c


Accession
MI0018127
Description
Brachypodium distachyon bdi-MIR395c precursor miRNA
Gene family
MIPF0000016; MIR395

Literature search
3 open access papers mention bdi-MIR395c
(32 sentences)

Sequence

ggcggcagaccacguuugguaauaccaugaGUUCCCUGCAAGCACUUCAUGaggccuaauucuaagggcuacugUGAAGUGUUUGGGGGAACUCuugguguuaccaagcuuuuacaacaaaaggag
(((....).))..((((((((((((((.(((((((((.(((((((((((((.(((((........)))))..)))))))))))))))))))))).)))))))))))))).................

Structure
----ggcggcagaccac              u         G             -a     aau 
                 guuugguaauacca gaGUUCCCU CAAGCACUUCAUG  ggccu   u
                 |||||||||||||| ||||||||| |||||||||||||  |||||    
                 cgaaccauuguggu CUCAAGGGG GUUUGUGAAGUgu  ucggg   c
gaggaaaacaacauuuu              u         -             ca     aau 


Annotation confidence Not enough data
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Genome context
5: 25455997-25456122 [+]
Clustered miRNAs
10 other miRNAs are < 10 kb from bdi-MIR395c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bdi-miR395c-3p

Accession MIMAT0020702
Description Brachypodium distachyon bdi-miR395c-3p mature miRNA
Sequence 75 - UGAAGUGUUUGGGGGAACUC - 94
Evidence experimental
Illumina [1,3]

Mature bdi-miR395c-5p

Accession MIMAT0027074
Description Brachypodium distachyon bdi-miR395c-5p mature miRNA
Sequence 31 - GUUCCCUGCAAGCACUUCAUG - 51
Evidence experimental
Illumina [3]

References

  1. PubMed ID: 21371551
    Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
    "Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G"
    "Genomics (2011) 97:282-293

  2. PubMed ID: 19772667
    Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response
    Zhang J, Xu Y, Huan Q, Chong K
    BMC Genomics (2009) 10:449

  3. PubMed ID: 23264558
    Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
    "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
    "Mol Plant (2013) 6:423-443