Stem-loop sequence bdi-MIR395c

Accession

MI0018127 (change log)

Description

Brachypodium distachyon miR395c stem-loop

Gene family

MIPF0000016; MIR395

Literature search

3 open access papers mention bdi-MIR395c
(32 sentences)

Stem-loop

   ----ggcggcagaccac              u         g            - a     aau 
5'                  guuugguaauacca gaguucccu caagcacuucau g ggccu   u
                    |||||||||||||| ||||||||| |||||||||||| | |||||    
3'                  cgaaccauuguggu cucaagggg guuugugaagug c ucggg   c
   gaggaaaacaacauuuu              u         -            u a     aau 

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Bd21; GCA_000005505.1): 5: 25455997-25456122 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from bdi-MIR395c

• bdi-MIR395e: 5: 25455195-25455344 [+]
• bdi-MIR395f: 5: 25455426-25455521 [+]
• bdi-MIR395g: 5: 25455723-25455811 [+]
• bdi-MIR395h: 5: 25455882-25455957 [+]
• bdi-MIR395c: 5: 25455997-25456122 [+]
• bdi-MIR395j: 5: 25456151-25456238 [+]
• bdi-MIR395k: 5: 25456290-25456375 [+]
• bdi-MIR395p: 5: 25456430-25456518 [+]
• bdi-MIR395l: 5: 25456562-25456657 [+]
• bdi-MIR395q: 5: 25456843-25456926 [+]
• bdi-MIR395n: 5: 25457116-25457205 [+]

Database links

• miRBase Tracker:MI0018127

Mature sequence bdi-miR395c-5p

• Accession: MIMAT0027074
• Sequence: 31 - guucccugcaagcacuucaug - 51
• Evidence: experimental; Illumina [3]

Mature sequence bdi-miR395c-3p

• Accession: MIMAT0020702
• Sequence: 75 - ugaaguguuugggggaacuc - 94
• Evidence: experimental; Illumina [1,3]

References

1. PMID:19772667 "Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response" Zhang J, Xu Y, Huan Q, Chong K BMC Genomics. 10:449(2009).
2. PMID:21371551 "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs" Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G Genomics. 97:282-293(2011).
3. PMID:23264558 "Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon" Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E Mol Plant. 6:423-443(2013).