miRBase entry: bdi-MIR5181b

Stem-loop bdi-MIR5181b


Accession
MI0018130
Description
Brachypodium distachyon bdi-MIR5181b precursor miRNA
Gene family
MIPF0001200; MIR5067

Literature search
1 open access papers mention bdi-MIR5181b
(2 sentences)

Sequence

ccguuaagaugaaaaugaacaugaauuauacUCCGAUCCAUAAUAAGUGUCGgggauuuaguacauuagcauaacuuuguacuaaaucuccgacaggccgacauuuauuauggaucggagggaguaugauuugagauaguagguaaucaaa
.......(((.........(.((((((((((((((((((((((((((((((((((((((((((((............))))))))))))((....)))))))))))))))))))))....))))))))))))).)..........)))...

Structure
ccguuaa   -gaaaaugaa a             ----                   --------            uuagc 
       gau          c ugaauuauacUCC    GAUCCAUAAUAAGUGUCGg        ggauuuaguaca     a
       |||          | |||||||||||||    |||||||||||||||||||        ||||||||||||      
       cua          g guuuaguaugagg    cuagguauuauuuacagcc        ucuaaaucaugu     u
----aaa   auggaugaua a             gagg                   ggacagcc            uucaa 


Annotation confidence Not enough data
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Genome context
4: 7045106-7045256 [+]

Database links

Mature bdi-miR5181b

Accession MIMAT0020705
Description Brachypodium distachyon bdi-miR5181b mature miRNA
Sequence 32 - UCCGAUCCAUAAUAAGUGUCG - 52
Evidence not_experimental

References

  1. PubMed ID: 21371551
    Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
    "Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G"
    "Genomics (2011) 97:282-293