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miRBase |
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Stem-loop sequence bdi-MIR5167a |
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Accession | MI0018134 (change log) | |||||
Previous IDs | bdi-MIR5167 | |||||
Description | Brachypodium distachyon miR5167 stem-loop | |||||
Gene family | MIPF0001714; MIR5167 | |||||
Stem-loop |
auugacau - uc c u a g -a -a au g uc -ucc ---g g a - a agcg ag g 5' gccaga ccuuuugagu uugc gcuuuccacu ugggugucauuggu cucuag uaagguaauuca uuggaag uagaa cua auu uuauguugccuucc aug u c gca gaag g gc ug c |||||| |||||||||| |||| |||||||||| |||||||||||||| |||||| |||||||||||| ||||||| ||||| ||| ||| |||||||||||||| ||| | | ||| |||| | || || 3' ugguuu ggaaaacuca aacg ugaaagguga acccacaguaacca gagauc auuccauuaagu gaucuuc aucuu gau uaa aauauaacggaagg ugc a g cgu cuuc c cg ac a -----uuc u ua c u c a ga cg cc a ga uucu auua g g u a ---a ga a |
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Confidence |
Annotation confidence: not enough data
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Genome context |
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Clustered miRNAs |
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Database links |
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Mature sequence bdi-miR5167a-5p |
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Accession | MIMAT0020709 |
Previous IDs | bdi-miR5167-5p |
Sequence |
37 - ccacuuugggugucauuggua - 57 |
Evidence | experimental; Illumina [2] |
Mature sequence bdi-miR5167a-3p |
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Accession | MIMAT0027078 |
Previous IDs | bdi-miR5167-3p |
Sequence |
244 - ccaaugacacccauaguggaa - 264 |
Evidence | experimental; Illumina [2] |
References |
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1 |
PMID:21371551
"Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs"
Genomics. 97:282-293(2011).
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2 |
PMID:23264558
"Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon"
Mol Plant. 6:423-443(2013).
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