miRBase entry: bdi-MIR5170

Stem-loop bdi-MIR5170


Accession
MI0018139
Description
Brachypodium distachyon bdi-MIR5170 precursor miRNA


Sequence

guauagucaauguauuuuggaaaucgagacuuacgaucauugaacuugucgaaacgucccacguaugaucaccgacgcagugucgccugugcuagguugccagcucagcacguuuuuugcaauuuguccccugaauaaucccuugcggugggacaugcuguccacgugcccagccaauuaagucccucgugguauuauucuucagggggcaaauugcaaaauuccgcucugaguuagcauaggugacgcacauacgguagaaauacaguacaauaugugguauauuUCAUCAAGUUGAGUGACCGUAaguuuugauuuuuaaaauacagugacuaaauugagaauugaaaccaaguucagugaacuucaguggau
...((((((.(((((((((((((((((((((((((.(((((.((((((..((((.((.((((((((..((((((.....(((((((((((((((........((((((..((..(((((((((((((((((((((((((.((..((((.(((((..((((..(....)..)))).......))))))))))).)))))...))))))))))))))))))))...))..))))))))))))))))))))).....)))).))...........)))))))).)).))))..)))))).))))).))))))))))))))))))))))))).))))))...................(((((.(((...))).)))))

Structure
-------------------------------------gua      a                         a     g      uc    c  c        ---------ga  -    acgca               gguugcca      ca  -uu                    ---     c  uu    u     -----au    uc a 
                                        uaguca uguauuuuggaaaucgagacuuacg ucauu aacuug  gaaa gu ccacguau           uc accg     gugucgccugugcua        gcucag  cg   uuuugcaauuuguccccuga   auaau cc  gcgg gggac       gcug  c c
                                        |||||| ||||||||||||||||||||||||| ||||| ||||||  |||| || ||||||||           || ||||     |||||||||||||||        ||||||  ||   ||||||||||||||||||||   ||||| ||  |||| |||||       ||||  |  
                                        aucagu acauaaaauuuuuaguuuugaAUGC AGUGA UUGAAC  CUuu ua gguguaua           ag uggc     cgcaguggauacgau        ugaguc  gc   aaaacguuaaacgggggacu   uauua gg  ugcu cccug       cgac  g g
uaggugacuucaagugacuugaaccaaaguuaagaguuaa      g                         C     G      UA    a  u        acaugacauaa  a    auaca               --------      uc  cuu                    ucu     u  --    -     aauuaac    cc u 


Annotation confidence Not enough data
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Genome context
1: 56853936-56854310 [-]

Database links

Mature bdi-miR5170

Accession MIMAT0020714
Description Brachypodium distachyon bdi-miR5170 mature miRNA
Sequence 287 - UCAUCAAGUUGAGUGACCGUA - 307
Evidence not_experimental

References

  1. PubMed ID: 21371551
    Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
    "Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G"
    "Genomics (2011) 97:282-293