Stem-loop bdi-MIR5178

Accession

MI0018149

Description

Brachypodium distachyon bdi-MIR5178 precursor miRNA

Sequence

auuaggggcauuugauaggaaauuuaacugCUUGGGACCGCCGGUCAGAGCcauguggcagacaaaaugugacuaugauccaacucugacccauagcacaauauaucgaacuuaguccuugccacucgggcccaucgaucacgguuuuuuuuugccauauggcUCUGACCGGUGGGCCUGAGCGauuagauugccugucaaauauccuaaucuc
(((((((..((((((((((.(((((((.((((((((.(((((((((((((((((((((((((.((((((((.(((((...((....))...)))))))))....(((((.....((((.........))))...)))))......)))).))))))))))))))))))))))))).)))))))).))))))).)))))))))).)))))))...

Structure

---       gc          a       c        A                         c    ---------------------------------------------    a     auc  a 
   auuaggg  auuugauagg aauuuaa ugCUUGGG CCGCCGGUCAGAGCcauguggcaga aaaa                                             ugug cuaug   ca c
   |||||||  |||||||||| ||||||| |||||||| ||||||||||||||||||||||||| ||||                                             |||| |||||   ||  
   uaauccu  uaaacugucc uuagauu GCGAGUCC GGUGGCCAGUCUcgguauaccguuu uuuu                                             acac gauac   gu u
cuc       -a          g       a        G                         u    uggcacuagcuacccgggcucaccguuccugauucaagcuauaua    -     cca  c 

Annotation confidence Low

Genome context

3: 8463664-8463877 [-]

Mature bdi-miR5178-3p

• Accession: MIMAT0020725
• Description: Brachypodium distachyon bdi-miR5178-3p mature miRNA
• Sequence: 164 - UCUGACCGGUGGGCCUGAGCG - 184
• Evidence: experimental ; Illumina [2]

Mature bdi-miR5178-5p

• Accession: MIMAT0027083
• Description: Brachypodium distachyon bdi-miR5178-5p mature miRNA
• Sequence: 31 - CUUGGGACCGCCGGUCAGAGC - 51
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 21371551
   Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
   "Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G"
   "Genomics (2011) 97:282-293


2. PubMed ID: 23264558
   Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
   "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
   "Mol Plant (2013) 6:423-443