Stem-loop bdi-MIR5185b

Accession

MI0018159

Description

Brachypodium distachyon bdi-MIR5185b precursor miRNA

Gene family

MIPF0001246; MIR5185

Literature search

1 open access papers mention bdi-MIR5185b
(1 sentences)

Sequence

uuaggguuguguacucacgcgaaagucccgcUUCUAGUUCAUUUUUCAAAUCuucuauucaaaauuuugcucauaauuugaauaagaggUUUGAGAAUUGAACUAGAAGCgggacuuuugcgggaucccguuugcacccuuacucaccagccc
..(((((.(((.((((.((((((((((((((((((((((((.((((((((((((.((((((((.((........)))))))))).)))))))))))).)))))))))))))))))))))))).))....)).)))))))).............

Structure

-----------uu     u   u  ----  a                        U            c        a  uug 
             agggu gug ac    uc cgcgaaagucccgcUUCUAGUUCA UUUUCAAAUCuu uauucaaa uu   c
             ||||| ||| ||    || |||||||||||||||||||||||| |||||||||||| |||||||| ||    
             uccca cgu ug    ag gcguuuucagggCGAAGAUCAAGU AAGAGUUUggag auaaguuu aa   u
cccgaccacucau     -   u  cccu  g                        U            a        -  uac 

Annotation confidence Not enough data

Genome context

5: 6094953-6095105 [+]

Mature bdi-miR5185b-5p

• Accession: MIMAT0020735
• Description: Brachypodium distachyon bdi-miR5185b-5p mature miRNA
• Sequence: 32 - UUCUAGUUCAUUUUUCAAAUC - 52
• Evidence: experimental ; Illumina [2]

Mature bdi-miR5185b-3p

• Accession: MIMAT0027087
• Description: Brachypodium distachyon bdi-miR5185b-3p mature miRNA
• Sequence: 90 - UUUGAGAAUUGAACUAGAAGC - 110
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 21371551
   Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
   "Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G"
   "Genomics (2011) 97:282-293


2. PubMed ID: 23264558
   Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
   "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
   "Mol Plant (2013) 6:423-443