miRBase entry: bpcv1-mir-B1

Stem-loop bpcv1-mir-B1


Accession
MI0018178
Description
Gene family
MIPF0001235; bpcv-mir-B1


Sequence

aucgcaugggaacucucaggcuuaguacuuuauaaaccgaaaguauAAUACUGUGCUUGAGAGUGCGCggu
(((((......((((((((((.(((((((((........))))).....)))).))))))))))..)))))

Structure
     auggga          u    -----     aua 
aucgc      acucucaggc uagu     acuuu   a
|||||      |||||||||| ||||     |||||    
uggCG      UGAGAGUUCG GUCA     ugaaa   a
     ----CG          U    UAAua     gcc 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature bpcv1-miR-B1

Accession MIMAT0020276
Description Bandicoot papillomatosis carcinomatosis virus type 1 bpcv1-miR-B1 mature miRNA
Sequence 47 - AAUACUGUGCUUGAGAGUGCGC - 68
Evidence experimental
Northern [1], SOLID [1]

References

  1. PubMed ID: 21345962
    Insights into Polyomaviridae microRNA function derived from study of the bandicoot papillomatosis carcinomatosis viruses
    "Chen CJ, Kincaid RP, Seo GJ, Bennett MD, Sullivan CS"
    "J Virol (2011) 85:4487-4500