Stem-loop bpcv2-mir-B1

Accession

MI0018179

Description

Bandicoot papillomatosis carcinomatosis virus type 2 bpcv2-mir-B1 precursor miRNA

Gene family

MIPF0001235; bpcv-mir-B1

Sequence

uugcacgauagcucucaggcuuaguacuuuauaaaccgaaaguauauAAUACUGUGCUUGAGAGUGCGCgguaa
.(((.((...((((((((((.(((((..(((((.((.....)).)))))))))).))))))))))...))))).

Structure

u   a  aua          u     cu     a  c 
 ugc cg   gcucucaggc uagua  uuaua ac g
 ||| ||   |||||||||| |||||  ||||| || a
 aug gC   UGAGAGUUCG GUCAU  AAuau ug a
a   -  GCG          U     --     a  a 

Annotation confidence Not enough data

Genome context

Unknown

Mature bpcv2-miR-B1

• Accession: MIMAT0020277
• Description: Bandicoot papillomatosis carcinomatosis virus type 2 bpcv2-miR-B1 mature miRNA
• Sequence: 48 - AAUACUGUGCUUGAGAGUGCGC - 69
• Evidence: experimental ; Northern [1], SOLID [1]

References

1. PubMed ID: 21345962
   Insights into Polyomaviridae microRNA function derived from study of the bandicoot papillomatosis carcinomatosis viruses
   "Chen CJ, Kincaid RP, Seo GJ, Bennett MD, Sullivan CS"
   "J Virol (2011) 85:4487-4500