Stem-loop ssp-MIR827

Accession

MI0018181

Description

Saccharum sp. ssp-MIR827 precursor miRNA

Gene family

MIPF0000726; MIR827

Sequence

accuguuuuguugguggucauuuaaccaugcuuccaucgaugggugcaugguuuauggcagagugugaugccaugaacucaucauggucaugcaugugugcauggUUAGAUGACCAUCAGCAAACAuguu
((.(((((.((((((((((((((((((((((...(((..(((((((.(((((((((((((........)))))))))).))))))..))))..)))...))))))))))))))))))))))))))).)).

Structure

-  c     u                      uuc   cg    --   c   -          gag 
 ac uguuu guugguggucauuuaaccaugc   cau  augg  gug aug guuuauggca   u
 || ||||| ||||||||||||||||||||||   |||  ||||  ||| ||| ||||||||||    
 ug ACAAA CGACUACCAGUAGAUUgguacg   gua  uacu  uac uac caaguaccgu   g
u  u     -                      ugu   cg    gg   -   u          agu 

Annotation confidence Not enough data

Genome context

Unknown

Mature ssp-miR827

• Accession: MIMAT0020279
• Description: Saccharum sp. ssp-miR827 mature miRNA
• Sequence: 106 - UUAGAUGACCAUCAGCAAACA - 126
• Evidence: not_experimental

References

1. PubMed ID: 21092324
   Identification and expression analysis of microRNAs and targets in the biofuel crop sugarcane
   Zanca AS, Vicentini R, Ortiz-Morea FA, Del Bem LE, da Silva MJ, Vincentz M, Nogueira FT
   BMC Plant Biol (2010) 10:260