Stem-loop ssp-MIR156

Accession

MI0018191

Description

Saccharum sp. ssp-MIR156 precursor miRNA

Gene family

MIPF0000008; MIR156

Sequence

aggcugacagaagagagugagcacacauggugccuuucuugcaugaugaacgaucgagagguucaugcucgaagcuaugcgugcucacuucucucucugucagccguuagaacucucucucgaucgcacccucccucgaucucucuuucguucucugucaaucucucccauggugauauuuauuugcuugucugcguguucucuuuccuaagcacagacacgaccaguucacggugccuuagguguuuuuuugcacuuugccugaagagaggaaggcaagggggagauggguuuuugaagguuUGACAGAAGAGAGUGAGCACAcacggugguuucuuancaugagugccaugcugggagcugugcgugcucacucucuaucugucagccacucaucaggcccaucucucuggunuccgcggcuauauguucgagcccuugaagunucuuggacacagaucgaucucuugugcaauuauaugauuauagaagcuaaauaugauuaacauguggaucucaaugucggguauauccuccuccuau
.(((((((((((((((((((((((.((((((.(((.....(((((((((((.........))))))(((((((((((((.(((((((((.((((.((((((((((...((((((((((((........((((.(((...(((((((((.......(((((.((........)))))))..........((((((.((..............)).))))))..(((.......)))((...((((((......)))))).))..))))))))).)))..))))))))).)))))))....)).))))))))))))))))))))).))...))))))).......))))..))))).))).)))))).))))))))))))).)))))))))).........((((..(....(((..(((((((((.........))))...........(((.(((.(((......)))))).))).....((((((((.........))))))))....)))))..)))..)..))))...............

Structure

--------------------------------------------------------------------------------------------------------------------------------------------------------a          -             a      g   uucuu     augaacgaucgagagguucau    -------       ---  c         u    c        -  -guu       -     cgaucgca    -c   cga         cguucucugucaaucucucccauggugauauuuauuugcuugucugcguguucucu 
                                                                                                                                                         ggcugacaga agagagugagcac cauggu ccu     gcaug                     gcuc       gaagcua   ug gugcucacu cucu ucugucag cc    agaacuc ucucu        cccu  ccu   ucucucuuu                                                        u
                                                                                                                                                         |||||||||| ||||||||||||| |||||| |||     |||||                     ||||       |||||||   || ||||||||| |||| |||||||| ||    ||||||| |||||        ||||  |||   |||||||||                                                        u
                                                                                                                                                         ccgacugucu ucucucacucgug gugucg ggg     cguac                     ugag       cuuuggu   ac CACGAGUGA GAGA AGACAGUu gg    uuuuggg agagg        ggga  gga   ggagagaag                                                        c
uauccuccuccuauaugggcuguaacucuagguguacaauuaguauaaaucgaagauauuaguauauuaacguguucucuagcuagacacagguucunugaaguucccgagcuuguauaucggcgccunuggucucucuacccggacuacuca          a             c      a   ----u     -------------------cg    uacnauu       ggc  A         -    -        u  aagu       u     --------    ac   --a         uccguuucacguuuuuuuguggauuccguggcacuugaccagcacagacacgaauc 

Annotation confidence Not enough data

Genome context

Unknown

Mature ssp-miR156

• Accession: MIMAT0020291
• Description: Saccharum sp. ssp-miR156 mature miRNA
• Sequence: 304 - UGACAGAAGAGAGUGAGCACA - 324
• Evidence: not_experimental

References

1. PubMed ID: 21092324
   Identification and expression analysis of microRNAs and targets in the biofuel crop sugarcane
   Zanca AS, Vicentini R, Ortiz-Morea FA, Del Bem LE, da Silva MJ, Vincentz M, Nogueira FT
   BMC Plant Biol (2010) 10:260