Stem-loop ssp-MIR159a

Accession

MI0018192

Description

Saccharum sp. ssp-MIR159a precursor miRNA

Gene family

MIPF0000010; MIR159

Literature search

1 open access papers mention ssp-MIR159a
(1 sentences)

Sequence

gaugcuuggauuugaagcggagcuccuaucauuccaaugaagggccguucugaaggguuguuccgcugcucguucaugguucccacuauccuaucucaucauguauguguguauguauuuucgagagggaggagaggagcuagacucucaugguggucgucuuugagauaggcuugugguuugcaugaccgaggagcugcaccguccccuugcuggccgcucUUUGGAUUGAAGGGAGCUCUGcauccugauccauccauc
((((..((((((.((.(((((((((((.(((.(((((.((..(((((.....(((((..((.(.(((.((((.(((((....((((...(((((((((..((((((....))))))......((((.((..(((((........))))).......)).)))))))))))))...))))....))))).)))).))).).))....)))))..)))))..)).))))).))).))))))))))).))..))))))..))))

Structure

    cu      -u  a           a   u     u  ag     uucug     --uu  u c   g    u     guuc    uau         ucauguauguguguauguauuuuc    g  -----ag     gag 
gaug  uggauu  ga gcggagcuccu uca uccaa ga  ggccg     aaggg    gu c gcu cucg ucaug    ccac   ccuaucuca                        gaga gg       gagag   c
||||  ||||||  || ||||||||||| ||| ||||| ||  |||||     |||||    || | ||| |||| |||||    ||||   |||||||||                        |||| ||       |||||    
cuac  accuag  cu cGUCUCGAGGG AGU AGGUU cu  ccggu     uuccc    ca g cga gagc aguac    ggug   ggauagagu                        uucu cu       cucuc   u
    cu      uc  a           A   U     U  cg     ---cg     cugc  c u   g    c     guuu    uuc         ------------------------    g  gguggua     aga 

Annotation confidence Not enough data

Genome context

Unknown

Mature ssp-miR159a

• Accession: MIMAT0020292
• Description: Saccharum sp. ssp-miR159a mature miRNA
• Sequence: 223 - UUUGGAUUGAAGGGAGCUCUG - 243
• Evidence: not_experimental

References

1. PubMed ID: 21092324
   Identification and expression analysis of microRNAs and targets in the biofuel crop sugarcane
   Zanca AS, Vicentini R, Ortiz-Morea FA, Del Bem LE, da Silva MJ, Vincentz M, Nogueira FT
   BMC Plant Biol (2010) 10:260