Stem-loop ssp-MIR168a

Accession

MI0018194

Description

Saccharum sp. ssp-MIR168a precursor miRNA

Gene family

MIPF0000081; MIR168

Literature search

1 open access papers mention ssp-MIR168a
(2 sentences)

Sequence

gccgcgccgccucgggcUCGCUUGGUGCAGAUCGGGACccgccgcccggccgacgggacggaucccgccuugcaccaagugaaucggagccggcgcagc
((.((((((.(((.((.(((((((((((((..(((((.(((...((((.....)))).))).)))))..))))))))))))).)).))).)))))).))

Structure

  c      c   g  c             AU     C   ccg    g 
gc gcgccg cuc gg UCGCUUGGUGCAG  CGGGA ccg   cccg c
|| |||||| ||| || |||||||||||||  ||||| |||   |||| c
cg cgcggc gag cu agugaaccacguu  gcccu ggc   gggc g
  a      c   g  a             cc     a   --a    a 

Annotation confidence Not enough data

Genome context

Unknown

Mature ssp-miR168a

• Accession: MIMAT0020294
• Description: Saccharum sp. ssp-miR168a mature miRNA
• Sequence: 18 - UCGCUUGGUGCAGAUCGGGAC - 38
• Evidence: not_experimental

References

1. PubMed ID: 21092324
   Identification and expression analysis of microRNAs and targets in the biofuel crop sugarcane
   Zanca AS, Vicentini R, Ortiz-Morea FA, Del Bem LE, da Silva MJ, Vincentz M, Nogueira FT
   BMC Plant Biol (2010) 10:260