miRBase entry: ssp-MIR396

Stem-loop ssp-MIR396


Accession
MI0018195
Description
Saccharum sp. ssp-MIR396 precursor miRNA
Gene family
MIPF0000047; MIR396

Literature search
1 open access papers mention ssp-MIR396
(1 sentences)

Sequence

UUCCACAGCUUUCUUGAACUGcaucucuaagaggagcagcucgaagccucgaacucuaccugcaugagcaggugcaguucaauaaagcuguggga
((((((((((((.(((((((((((((((...(((((.((.((((....)))).)))).))).....)).))))))))))))).))))))))))))

Structure
            C             -  --aag   -  c  c    a 
UUCCACAGCUUU UUGAACUGcaucu cu     agg ag ag ucga g
|||||||||||| ||||||||||||| ||     ||| || || ||||  
agggugucgaaa aacuugacgugga ga     ucc uc uc agcu c
            u             c  guacg   a  -  a    c 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature ssp-miR396

Accession MIMAT0020295
Description Saccharum sp. ssp-miR396 mature miRNA
Sequence 1 - UUCCACAGCUUUCUUGAACUG - 21
Evidence not_experimental

References

  1. PubMed ID: 21092324
    Identification and expression analysis of microRNAs and targets in the biofuel crop sugarcane
    Zanca AS, Vicentini R, Ortiz-Morea FA, Del Bem LE, da Silva MJ, Vincentz M, Nogueira FT
    BMC Plant Biol (2010) 10:260